Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1054 86.0 8e-12 >seq1054 Length=9129 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 176787 GCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGT 176846 |||||||| ||| || |||||||| || || | ||||||||| || ||||| | Sbjct 4878 GCGCCACT--AGCCTCACGGACATTGAGCAGTTTACCTCTGAGAGGGAATACGCCGTAAT 4935 Query 176847 GATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCG 176906 ||| || || | || ||||||||||| || || | || || || || || || || | Sbjct 4936 TATCGCGTCCTATGACCGAGAGACCAGCCACAGCCAAGGATTTGGCTGAGTCTCCTTCGG 4995 Query 176907 TCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACT 176966 ||| ||| || ||||| | | | | | ||| || || || |||||||| |||| || Sbjct 4996 TCAAGATCAGTGTACAATCTGCGGCCTTCTTCGTTCCGGCATTATTCGCATCTTCCAGCT 5055 Query 176967 TGGGAATACCAGTAAT 176982 || ||| ||||| || Sbjct 5056 TGACAATCCCAGTGAT 5071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613386684179400