Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7108 140 8e-28 seq10166 127 5e-24 >seq7108 Length=7890 Score = 140 bits (154), Expect = 8e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||||| || || || || ||||||||||||| ||||||||||||||||| Sbjct 6257 TCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGT 6198 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| || ||||| |||||||| |||||||| || || |||||| ||| || Sbjct 6197 GCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCC 6138 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || |||||||| ||| ||| || | ||| || | || ||| || || | Sbjct 6137 TTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACCTCAAG 6078 Query 199588 CGTGATCGTCTTACCCGTGAGA 199609 ||||| || ||||| |||||| Sbjct 6077 GGTGATTGTTTTACCTGTGAGA 6056 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || || |||||||||| ||||||||| || | || | || ||| Sbjct 5657 AGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCT 5598 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| |||||||||||||| ||| ||| ||||| ||| Sbjct 5597 TCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 5538 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || ||||| ||||| ||| Sbjct 5537 TGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTC 5478 Query 199598 TTACCCGTGAG 199608 ||||| || || Sbjct 5477 TTACCAGTCAG 5467 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | |||||| || || || || || | |||||| || |||| ||| Sbjct 5957 CGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTG 5898 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||| || || ||||||||||| || || ||| || || Sbjct 5897 CGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCC 5838 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| |||||| || | |||||| | | |||||| |||| Sbjct 5837 TCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGA 5778 Query 199589 GTGATCGTCTTACCCGTGAG 199608 ||||| ||||| || ||||| Sbjct 5777 GTGATGGTCTTGCCGGTGAG 5758 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || || | || |||||||| || | |||||||||||||| || Sbjct 5090 CGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTA 5031 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||| || |||||||| ||||| | || || || ||||| || ||| Sbjct 5030 CGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCT 4971 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| || || | |||||| | | || || |||| Sbjct 4970 TCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGG 4911 Query 199589 GTGATCGTCTTACCCGTGAG 199608 ||||| ||||| |||||||| Sbjct 4910 GTGATAGTCTTGCCCGTGAG 4891 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || ||||| ||||||| ||||||||| || | || | || ||| Sbjct 5366 AGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCT 5307 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | ||||||||||||||| || || || || Sbjct 5306 TCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCT 5247 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | || || || | || || ||| Sbjct 5246 TGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTC 5187 Query 199598 TTACCCGT 199605 || || || Sbjct 5186 TTGCCGGT 5179 >seq10166 Length=49910 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || | ||||| || ||||||||||||| || ||||| |||| ||| Sbjct 22519 CGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTT 22460 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || || || ||||||||||| ||||||||||| || ||| Sbjct 22459 CGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCT 22400 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||||||| |||| |||||| | | || || || | Sbjct 22399 TCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGA 22340 Query 199589 GTGATCGTCTTACCCGTGAG 199608 |||||||||||||| || || Sbjct 22339 GTGATCGTCTTACCAGTAAG 22320 Score = 122 bits (134), Expect = 2e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || ||| ||||| | || ||||||||||||| ||||||||| ||||| || Sbjct 21939 TCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGT 21880 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || || || || ||||| ||||| | || || ||||| ||| ||| || Sbjct 21879 ACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCC 21820 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || |||||||| || ||| |||| ||||| | | ||| || ||||| Sbjct 21819 CTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAA 21760 Query 199588 CGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||| || |||||| Sbjct 21759 GGTGATGGTCTTGCCTGTGAGA 21738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178684225977905