Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10166 102 9e-17 seq7108 102 9e-17 >seq10166 Length=49910 Score = 102 bits (112), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| ||||| ||||| ||| |||||||||||| |||||||||| | || || | Sbjct 21932 CGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGACCA 21873 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| || || ||||| || || ||||| || ||||| | || | || ||||||| Sbjct 21872 TCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCCCTCCTTG 21813 Query 46499 TCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| ||| | || | | | |||||| ||||| || |||| ||||| Sbjct 21812 TCTTGAATCTT-GGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAAGGTGAT 21754 Query 46558 GGTTTTGCCCGTCAG 46572 ||| ||||| || || Sbjct 21753 GGTCTTGCCTGTGAG 21739 >seq7108 Length=7890 Score = 102 bits (112), Expect = 9e-17 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || || || |||||||| | || || || | || || || ||||||||||| || Sbjct 6525 TCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAA 6466 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| |||| ||| | || |||||||| |||||| |||| | ||| Sbjct 6465 ATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTCA-CGTT 6407 Query 46523 GCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | || |||||| |||||| || |||| ||||||||||| ||||||| Sbjct 6406 GTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGTCA 6357 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | || | |||||||| | ||| ||||||||||||||||||||| | Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||||| |||| || || |||||||||||||| || | || || || || | || Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||| ||||| |||||| ||| | | | || || ||||| || Sbjct 6142 ATGCCTTCCTTGTCTTGAATCTTGGTCTTGA-CGTTGTCAATGGTATCCGATGATTCGAC 6084 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAG 46572 || | ||||| ||||| || || || Sbjct 6083 CTCAAGGGTGATTGTTTTACCTGTGAG 6057 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | |||| ||||| |||| ||| |||||||| |||||||||| Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || | ||| ||||| || || ||||| ||||||||||| | || Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||| || ||||| ||| | ||| | | | |||||| || || || Sbjct 5261 ATCCCCTCCTTATCTTGAATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGACTCAAC 5203 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCA 46571 || | || || || ||||| |||| Sbjct 5202 CTCAAGGGTAATAGTCTTGCCGGTCA 5177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| | || || || |||| || || |||||||| || || Sbjct 5636 TCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAG 5577 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 5576 ATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGTATCTTCGCCTTCA-CGTT 5518 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || |||| |||||||| || || ||||| Sbjct 5517 GTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTTACCAGTCAG 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565127365981800