Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8339 113 5e-20 seq7108 109 5e-19 seq10166 87.8 2e-12 >seq8339 Length=4102 Score = 113 bits (124), Expect = 5e-20 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 ||||| || || || || || || || ||| |||| || ||||| ||| | ||| Sbjct 2137 ATTTGGAATCCATAGAAACAGCGTGCTTCGGCCACTTGGACTTCGCCGCTGAACCTCTCA 2196 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 | || || |||||||||||||| || ||||| || ||||| || ||||| |||||| Sbjct 2197 ATAAGGTTCTCGTTGACGATGCCATCCGATGCGGCAAAGAAGGCGAGGACGTGTTTGATG 2256 Query 133339 AAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || || ||||| |||||| | ||||||||| || |||| ||||| || || Sbjct 2257 AAGTGTTTCTCGTCAGAGTTCAATTTGTTGTCCCAGTCGTGCATGTCTTTGGAGAGATCA 2316 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 | ||| ||| ||||||| || || |||||||| |||||| Sbjct 2317 ATCTCTTCGGCGGTCCAGAAGGATGCCTCGGCGCGTTTGTA 2357 >seq7108 Length=7890 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| || || ||| | || || ||| || |||||| | | |||| | || | Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACG-TGAAGGC 5237 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | || || ||||| || || | ||||| ||||| | || | || ||||| Sbjct 5238 CAAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAA 5297 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||| |||| |||| ||||||||| |||||||||||||||||| || | || ||||| Sbjct 5298 ACAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCA 5357 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | ||||||| Sbjct 5358 TTTGGTCCTTCGTCTCCGAGGCGG 5381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || ||||| |||||| | || ||||| | | || | | | | |||| | | Sbjct 6057 CTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACG--TCA 6114 Query 38324 AGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382 ||| || || | ||||| || || ||||| | || ||||| || ||||||| ||| | Sbjct 6115 AGACCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCG 6174 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442 |||| || || || |||| |||||| | |||||||| ||||||||||| | || | Sbjct 6175 GCAAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCC 6234 Query 38443 TGCATTTGGTGCTGCG 38458 | ||| |||| || || Sbjct 6235 TTCATCTGGTCCTCCG 6250 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || || ||||||||| | || || ||| || | |||| | | | |||| | || Sbjct 5467 CTGACTGGTAAGACCATCACCTTGGAAGTTGAGTCCTCGGACACCATCGACAACG-TGAA 5525 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || || | ||||| || || ||||| | ||||| ||||| || || | || || Sbjct 5526 GGCGAAGATACAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTTATCTTTGCTGG 5585 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| || || || |||| || ||||| ||||||||||||||||||||| | || || Sbjct 5586 CAAGCAACTTGAAGACGGCCGTACCCTTGCGGACTACAACATCCAAAAGGAATCTACCCT 5645 Query 38444 GCATTTGGTGCTGCGT 38459 || | || || ||| Sbjct 5646 CCACCTCGTTCTCCGT 5661 >seq10166 Length=49910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || || || || ||||| | || || ||| || | |||| | | | |||| | || Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACG-TGAA 22378 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || || | |||||||| || || ||| | ||||| || || ||||| | ||||| Sbjct 22379 GGCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGG 22438 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || |||| || || || ||||| || ||||||||||| | ||||| Sbjct 22439 CAAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCT 22498 Query 38444 GCATTTGGTGCTGCG 38458 |||||||| || || Sbjct 22499 CCATTTGGTTCTTCG 22513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500074547305600