Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7108 134 5e-26 seq11162 132 2e-25 seq10166 105 3e-17 seq2032 86.0 2e-11 seq8912 84.2 9e-11 >seq7108 Length=7890 Score = 134 bits (148), Expect = 5e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || |||||||| || || ||||| || |||||||| |||| |||||| | || Sbjct 6057 CTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAG 6116 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || |||||||| |||||||| |||||||| |||||||||||| | |||||| | || Sbjct 6117 ACCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGGC 6176 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || ||||||||||| || | |||||||| || || ||||| | ||||| | || ||| Sbjct 6177 AAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCTT 6236 Query 391251 CA 391252 || Sbjct 6237 CA 6238 Score = 102 bits (112), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 391070 ACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAA 391129 ||| || || || ||||| || || || || || || || || | |||||| | | || Sbjct 4890 ACTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAA 4949 Query 391130 ACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGG 391189 ||||||||||| |||||||| || || || ||||||||||| || || || | || Sbjct 4950 GGCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGG 5009 Query 391190 GAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 |||||||| ||||| || | || ||||| || || |||||| | ||||| Sbjct 5010 AAAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGA 5060 Score = 100 bits (110), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| || ||||| || || || || || ||||| || || | ||||| | || Sbjct 6357 TGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGA 6416 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || || ||||| |||||||| || || || ||||| |||||||| ||||| | || | Sbjct 6417 CCAAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGCA 6476 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | |||||||||||||| | || ||||||| || || ||| | || || | || |||| Sbjct 6477 AGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTTC 6536 Query 391252 ACTTAGTA 391259 |||| ||| Sbjct 6537 ACTTGGTA 6544 >seq11162 Length=11478 Score = 132 bits (146), Expect = 2e-25 Identities = 201/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 451323 CAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAG 451382 |||| | || || |||||||| ||||| || | || || || ||||| || ||||| | Sbjct 2674 CAGTTGTCACCGTCCCCGCTTACTTCAACGACTCTCAGCGACAGGCAACCAAGGATGCCG 2733 Query 451383 GACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAG 451442 | | ||| ||||| | ||||| ||||||||||| ||||| || || || ||||| | | Sbjct 2734 GTCTTATCGCTGGACTCAATGTCCTTCGAATTATCAATGAGCCAACCGCCGCTGCCATTG 2793 Query 451443 CATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTG 451502 |||| || | ||| || || | || | ||| |||| |||| | || ||| | | Sbjct 2794 CATACGG-TTTGGACAA--GAAGGCTACGGGAGAGCGAAATGTTTTGATCTTCGATCTAG 2850 Query 451503 GTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGG 451562 | ||||| ||| |||| || | ||| | |||||||| || | |||||||| |||| Sbjct 2851 GAGGAGGCACTTTTGATGTCTCCCTTCTTACTATTGAAGAGGGCATCTTTGAAGTCAAGG 2910 Query 451563 CAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 | || ||||| || ||||| || |||||||| |||| ||| Sbjct 2911 CGACTGCCGGTGACACCCATCTTGGTGGTGAAGACTTTGACAAT 2954 >seq10166 Length=49910 Score = 105 bits (116), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || |||||||| || || |||||||| ||||| || ||||| | ||| || | || Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAG 22379 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || ||||| || || ||||| || || || || || |||||| | || || | || Sbjct 22380 GCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGC 22439 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||||||||| || ||||| ||||||| |||||||| | ||||| | || || Sbjct 22440 AAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTC 22499 Query 391251 CACTTAGT 391258 || || || Sbjct 22500 CATTTGGT 22507 >seq2032 Length=12058 Score = 86.0 bits (94), Expect = 2e-11 Identities = 190/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| ||||| || || || || |||||||| || || ||||||||||| || || || Sbjct 5929 GCAGTTATTACCGTCCCTGCCTACTTCAATGACGCCCAGCGGCAAGCAACCAAGGACGCC 5988 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || ||| || |||| || || | || || |||||||| || |||||||| Sbjct 5989 GGTGCAATCGCTAAGCTAGATGTGCTCCGTGTCATCAACGAACCTACCGCTGCTGCTCTG 6048 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 |||||||| || ||| | |||| | || |||| || | Sbjct 6049 GCATATGGCCT-GGACCGGGA--------AGAATCCCGATTGATCGCTGTATACGACCTC 6099 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG-GTATTTGAAGTAAA 451560 || || || ||| |||| ||| | | || | || ||| ||| || |||||||| || Sbjct 6100 GGGGGTGGTACTTTTGATGTTTCCAT-CCTTGAGATGCAGAAGGGTGTTTTTGAAGTCAA 6158 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | ||||||| ||||| || ||||||||||| || || |||| Sbjct 6159 GTCAACCAACGGTGACACCCATCTAGGAGGCGAGGACTTTGA 6200 >seq8912 Length=57583 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| ||||| || ||||| ||| | ||||||| | ||||||||||| Sbjct 44028 GCTGTGATCACTGTCCCCGCCTACTTCAACGATTCCCAACGGCTGTCTACTAAAGATGCC 43969 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||||||| | |||| ||||| ||||| || || || || || ||||| | Sbjct 43968 GGTGCCATTGCTGGTCTCGATGTGCTTCGTATTATCAACGAGCCCACCGCCGCTGCCATT 43909 Query 451442 GCATATGGACTAGG 451455 ||||| || || || Sbjct 43908 GCATACGGGCTTGG 43895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975320592187220