Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8912 183 4e-41 seq11162 132 6e-26 seq5642 89.7 7e-13 >seq8912 Length=57583 Score = 183 bits (202), Expect = 4e-41 Identities = 523/797 (66%), Gaps = 18/797 (2%) Strand=Plus/Plus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 ||||| ||||| | || ||||| ||||| |||||||||||||| || | || |||| | Sbjct 43307 GCGGCCTGGACAGCTGCACCGTAAGCGACGGCCTCATCGGGGTTGATGCTCTTGTTCAAT 43366 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 | || || | || |||| | ||| |||||||| || ||||| |||||| Sbjct 43367 TGGCGCCCACCGAAGAAGTCAGATACGAGGGATTGGATTTTCGGAATCCGTGTAGATCCA 43426 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 ||||| | ||||| || | || || || || |||||||| | ||| ||| || Sbjct 43427 CCGACAAGGACGATGTCCTCAACCTTGGACTTGTCGATCTTGGCGTCCTTGAGTACCTTA 43486 Query 7205 TCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGG 7264 ||||| || |||| | ||||| | | || || || || || || Sbjct 43487 TCGACGGGATCCAGAGTGGAGCGGAAGGTTTGAGCGTTGATCTCTTCGAATCGAGCTCGA 43546 Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG- 7323 | |||| | ||||||| ||| | | | | ||||||| || | || ||||| Sbjct 43547 GAGATGGCAGACGAGAAATCGGTGCCCTGGAAAAGAGAATCAACCTCGACCGTAGTTTGG 43606 Query 7324 -TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGG 7382 || || || || | ||||| ||||| ||||| || || | || | |||||| || | Sbjct 43607 GTGACG--GAGGAAAGTGTTCGTTTTGCTCGCTCGCATGCAGAGCGAAGACGACGGAGAG 43664 Query 7383 CACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTC 7442 | || | | |||| || || ||| ||| || || ||||| ||||||| Sbjct 43665 CGCGGGCATCACCGTCGATGTCAAGCTTGGTTTTTCGCTTGAACTCGCTCTTGAAGTGTT 43724 Query 7443 GAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGA 7502 |||||| ||||| || || || |||||||| || || || ||||| ||||| | Sbjct 43725 CAAGGAGGGCATTGTCGAAGTCCTCTCCTCCCAAGTGGGTGTCACCGGCGGTAGCTTTAA 43784 Query 7503 CTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGT 7562 | || | ||| ||| | || | | || ||||| || |||||||| |||| || Sbjct 43785 CAGTGAAAACACCACCTGCGATCGAGAGGAGAGATACATCGAAGGTACCACCTCCCAAGT 43844 Query 7563 CAAAAATGAGTAC-GTTCGTATCGTCGTCT--TTGTTCTTA------TCG---AGACCGT 7610 ||||||| || || ||||| | || ||| || || | | ||| || |||| Sbjct 43845 CAAAAATTAGGACCGTTCGCTCCTTCTTCTCCTTCTTATCACTAGCTTCGCCAAGCCCGT 43904 Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATA 7669 | || || || || || || || || || ||||||||||| ||| | || |||||||| Sbjct 43905 ATGCAATGGCAGCGGCGGTGGGCTCGTTGATAATACGAAGCACA-TCGAGACCAGCAATG 43963 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | | |||||||| || | | ||||| |||||||| |||||||| ||||| || | Sbjct 43964 GCACCGGCATCTTTAGTAGACAGCCGTTGGGAATCGTTGAAGTAGGCGGGGACAGTGATC 44023 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || || | | | || | ||| ||||| | | ||| || | || || | |||||||| Sbjct 44024 ACAGCCTTCTTCACCTCCTTGCCGAGTTTGGTTTCGGCAGTCTCCTTGAGCTTGGTAAGT 44083 Query 7790 ACCATCGATGAAATCTC 7806 ||||| | || ||||| Sbjct 44084 ACCATAGCGGAGATCTC 44100 >seq11162 Length=11478 Score = 132 bits (146), Expect = 6e-26 Identities = 160/217 (74%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 || || | ||| || |||||||| || ||||| || |||| | |||||||||||| | Sbjct 2314 AATTTGCGTCCAATCAGACGCTTGGCGTCAAAGACAGTGTGGTGGGGGTTCATGGCGACT 2255 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 ||||||||||| || || ||||| ||||| || || |||| || ||||| || Sbjct 2254 TGGTTCTTCGCGGCATCACCGATCAGACGCTC---GGAGTCATTAAAAGCCACGTATGAG 2198 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || ||||| || || | ||| ||||| || ||||| |||||||| || Sbjct 2197 GGAGTGGTGCGGTTTCCTTGATCATTGGAAATGATTTCAACCCGGTCATTTTGCCATACA 2138 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || || || || | |||||||||| Sbjct 2137 CCCACGCATGAGTAGGTGGTGCCAAGGTCAATACCGA 2101 Score = 127 bits (140), Expect = 3e-24 Identities = 199/280 (71%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||||||||| | || || || || || ||||| |||||||||||||| || Sbjct 2950 TCAAAGTCTTCACCACCAAGATGGGTGTCACCGGCAGTCGCCTTGACTTCAAAGATGCCC 2891 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 ||||||| | | | || |||||||| || || || || || || || || | || Sbjct 2890 TCTTCAATAGTAAGAAGGGAGACATCAAAAGTGCCTCCTCCTAGATCGAAGATCAAAACA 2831 Query 7576 GTTCG---TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 |||| | ||| | | ||||| || | |||||| || || || || || ||||| Sbjct 2830 TTTCGCTCTCCCGTAGCC----TTCTTGTCCAAACCGTATGCAATGGCAGCGGCGGTTGG 2775 Query 7633 TTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||||| ||||| |||| |||| || || ||||| ||| | ||||| || || || | Sbjct 2774 CTCATTGATAATTCGAAGGACA-TTGAGTCCAGCGATAAGACCGGCATCCTTGGTTGCCT 2716 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 |||| || || ||||| ||||| || ||||| || || || Sbjct 2715 GTCGCTGAGAGTCGTTGAAGTAAGCGGGGACGGTGACAAC 2676 >seq5642 Length=23535 Score = 89.7 bits (98), Expect = 7e-13 Identities = 173/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || |||||||| || || || ||||| || ||| || || | |||| Sbjct 3438 TCGAAATCTTCTCCTCCCAAGTGAGTGTCACCGGCGGTGGCCAAGACCTCGAAAACACCT 3497 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | || |||||||| || || || |||| ||| ||| | | | Sbjct 3498 TCGTCGATCGACAGGAGGGACACATCAAAGGTTCCTCCTCCCAAATCATAAACG---ATG 3554 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | ||| | ||| | | || || ||||| || || || ||||| || || ||| Sbjct 3555 ATCTGGTGCTCGCCCTTGGTTCTGTCTAGTCCGTAGGCAATGGCTGCCGCGGTGGGCTCA 3614 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| || || || |||||| ||||| || ||| | || || || || ||||| || Sbjct 3615 TTAACGATTCGGAGCACGTTCAGACCAGCGATTGTTCCGGCGTCCTTGGTGGCTTGACGC 3674 Query 7697 TGCGAATCGTTAAAG 7711 || | || || ||| Sbjct 3675 TGGGCGTCATTGAAG 3689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635008036100600