Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1054 87.8 2e-12 >seq1054 Length=9129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 240/354 (68%), Gaps = 18/354 (5%) Strand=Plus/Plus Query 169214 ATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACAT--CTTG-GTA-GTCTT 169269 ||| ||||| ||||| || | |||||||| || ||| | |||| ||| ||||| Sbjct 4760 ATCGGTCATGATCATCAGGCTGCCATAGCGGAGG---GAATCCCTACTTGTGTATGTCTT 4816 Query 169270 TTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTT-GATGTGAGC 169328 ||||| ||||| |||| ||| | |||| | |||| | | || || || || Sbjct 4817 G-CCTTGCTGAAGCCCCATGATTTGTTTGATGT-GTTGTATTTCTGCATTAGACAGAAGT 4874 Query 169329 TGTGC--CACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCAT 169386 || || |||| ||| || |||||||| || || | |||||| || ||||| | Sbjct 4875 TGCGCGCCACT--AGCCTCACGGACATTGAGCAGTTTACCTCTGAGAGGGAATACGCCGT 4932 Query 169387 AGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCT 169446 | | ||| ||||| | ||| |||||||| || || || | || ||| ||||| || || | Sbjct 4933 AATTATCGCGTCCTATGACCGAGAGACCAGCCACAGCCAAGGATTTGGCTGAGTCTCCTT 4992 Query 169447 CCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCA 169506 | || | || || ||||| | | | | | | ||| || || || || || || |||| Sbjct 4993 CGGTCAAGATCAGTGTACAATCTGCGGCCTTCTTCGTTCCGGCATTATTCGCATCTTCCA 5052 Query 169507 ACTTGGGAATACCAGTAATTT-TGGACTTGCGAGCACC-ATCGGTTTTCTTGAG 169558 |||| ||| ||||| || || || || | ||| ||||||||||||||| Sbjct 5053 GCTTGACAATCCCAGTGATGCGTGAAC--GCTTGGACCCATCGGTTTTCTTGAG 5104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589864905646600