Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10166 170 4e-37 seq7108 158 3e-33 >seq10166 Length=49910 Score = 170 bits (188), Expect = 4e-37 Identities = 147/182 (81%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||||||||| || || ||||| ||||| ||||||| |||||||||||| || Sbjct 22211 TGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCATCTTCGAGTTGT 22152 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | |||||| ||||||||||| || ||||||||||||||||| || Sbjct 22151 TTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATCTTA 22092 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || ||||| ||||| || || ||||| | || | ||| ||||||||| Sbjct 22091 GCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATCGTTTTTCCTGTC 22032 Query 195118 AA 195119 || Sbjct 22031 AA 22030 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || ||||| | || ||||| ||||| || ||||| ||||| | || | Sbjct 21935 AGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGA 21876 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||| || ||||| || ||||| | ||||||||||||||||||||||| || Sbjct 21875 CCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCCCTCC 21816 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || || ||||| || || ||||||||| ||| ||||| | ||| Sbjct 21815 TTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAAGGTG 21756 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| ||||| Sbjct 21755 ATGGTCTTGCCTGT 21742 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | || || |||||||| ||||| ||||| || || || ||||||| Sbjct 22517 GAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCG 22458 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| || || || || || ||||| || ||||| ||||| || || |||||||| Sbjct 22457 ACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTC 22398 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||| ||||| || ||| ||||| || |||||||| || || |||||||| || Sbjct 22397 TTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGT 22338 Query 195102 AACCGTCTTTCCTGT 195116 | |||||| || || Sbjct 22337 GATCGTCTTACCAGT 22323 >seq7108 Length=7890 Score = 158 bits (174), Expect = 3e-33 Identities = 146/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| ||||| |||||||| || || | ||| | ||| ||||| Sbjct 6244 ACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCA 6185 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || |||||||| || |||||||||||||| ||||||||| Sbjct 6184 AGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCTTGA 6125 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| |||||||| ||||| ||| || |||||||| | || || Sbjct 6124 ATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACCTCAAGGGTGATTGTTTTA 6065 Query 195112 CCTGT 195116 ||||| Sbjct 6064 CCTGT 6060 Score = 140 bits (154), Expect = 7e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || || ||||| ||||| ||||||||||| ||||| | Sbjct 5955 GAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCG 5896 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||||||| ||||| || || || || || || ||||| || ||||| ||||| || Sbjct 5895 CCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTC 5836 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| || || || || ||| || || |||||||||||||| ||| ||||| || || Sbjct 5835 TTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGT 5776 Query 195102 AACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 5775 GATGGTCTTGCCGGT 5761 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || || || ||||| || ||||| || ||||| || | || ||||| Sbjct 5655 AACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTC 5596 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || |||||||| || || ||||| |||||||||||||| ||||| || Sbjct 5595 AAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 5536 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| || ||||||||||| || ||||| | ||| | ||||| Sbjct 5535 TATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTT 5476 Query 195111 TCCTGTCA 195118 || |||| Sbjct 5475 ACCAGTCA 5468 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || || || | |||||||| || ||||||||||| || || | || | Sbjct 5087 AGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGG 5028 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || || || || || ||||| | |||||||| || || || || ||||| Sbjct 5027 CCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCC 4968 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| |||||| || ||||||||||||||| || || || ||||| Sbjct 4967 TTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGTG 4908 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 4907 ATAGTCTTGCCCGT 4894 Score = 127 bits (140), Expect = 5e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| ||||| ||||| ||||| || || || || | |||||||| || || Sbjct 6538 GTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTG 6479 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||||| || || || || |||||||| |||||||| || || Sbjct 6478 CTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTT 6419 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| |||||||| ||| || || ||||| | || || || || Sbjct 6418 GGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGT 6359 Query 195117 CAA 195119 ||| Sbjct 6358 CAA 6356 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||||||||| || ||||| ||||| || || | || ||||| | ||| Sbjct 5357 TGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCCAACTGT 5298 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| ||||| | ||| || ||||| ||||| || || || || |||||||| || Sbjct 5297 TTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCTTGAATCTTG 5238 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| || || ||||| || || || |||||||||| ||||| || ||| Sbjct 5237 GCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTCTTGCCGGTC 5178 Query 195118 AA 195119 || Sbjct 5177 AA 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109258207613405