Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8339 82.4 9e-11 seq6918 82.4 9e-11 >seq8339 Length=4102 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| || ||||| || ||||||| | ||||| ||||| || || || || Sbjct 1667 CATGCAAAGTCGGTGTGTAGACCTTCGTCTCGAGATATCAGCTCATTGGAGAAGGTCAAT 1726 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGA 19073 |||||||| ||||| | || || | |||||| || |||||||||||||| || Sbjct 1727 CCAGGCATTAGTCCGCGCTTCTTGAGCCAGAAGATTGAAGCAAATGATCCTGA 1779 >seq6918 Length=27162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 173/255 (68%), Gaps = 16/255 (6%) Strand=Plus/Plus Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 |||||| |||||| | ||| || ||||||||||| || || ||||| || || || Sbjct 5906 ATTGTTGAAAACTCGAAGCATGGGCACAATACCATTGGAGTAGCCGTTGGTCCCAGAGAT 5965 Query 48446 ATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAG 48504 |||||| ||| |||| | ||||| |||| || | | || || ||||| || | || | Sbjct 5966 ATAACTACCAGTAGCCCGGATATTGTTAATGTGGAGT-CCGATTCCACCGGCACTCTTGG 6024 Query 48505 ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATAT 48564 | || | ||| || ||| | ||| ||||||||||| || || | ||| || Sbjct 6025 AGATCATAGCGCAAGTTTTCAAGGTGTCATAAATTCCGTCAAT-------TGAATCTGAT 6077 Query 48565 TTAATAGAAAACAA----CTAGAC---ATTTGCGGATGACAAGTTCCTGAATTAAATAAT 48617 ||| | | || ||| | |||| | ||| |||||| |||||| | ||| || | | Sbjct 6078 TTACTGGCAACCAAGAAGCAAGACGAGAGTTGTGGATGAGGAGTTCCGGCATTGAAAAGT 6137 Query 48618 GTTGGAGATGCATGA 48632 || || || || ||| Sbjct 6138 GTCGGTGAGGCGTGA 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561998380752600