Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7108 100 2e-15 seq10166 96.9 3e-14 seq8912 93.3 3e-13 seq11162 89.7 4e-12 >seq7108 Length=7890 Score = 100 bits (110), Expect = 2e-15 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| || |||||||||||| || ||||| |||||||| ||||| | ||| | Sbjct 6253 AGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGG--ATATTGTAGTCAGCCAAAGTGC 6196 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||||||||| || ||||| ||||| || | ||| ||||| |||||||| |||| Sbjct 6195 GCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTT 6136 Query 563375 CTTTATCTTGAATTTT 563390 | || |||||||| || Sbjct 6135 CCTTGTCTTGAATCTT 6120 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||||||||| | ||||| || |||||| ||| ||||| || || || || | Sbjct 6552 AGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGG 6493 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| || ||||||||||| | | ||||||||| || || || ||||| Sbjct 6492 CCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCC 6433 Query 563377 TTATCTTGAATTTT 563390 || ||||| || || Sbjct 6432 TTGTCTTGGATCTT 6419 >seq10166 Length=49910 Score = 96.9 bits (106), Expect = 3e-14 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| || | |||||| || ||| | | ||| || ||||| || || ||||||| Sbjct 22226 AGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGG--ATGTTGTAGTCGGCCAGAGTTC 22169 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| |||||||| || ||||| || | || |||||| || ||||| ||||||| Sbjct 22168 GCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTT 22109 Query 563375 CTTTATCTTGAATTTT 563390 |||| |||||||| || Sbjct 22108 CTTTGTCTTGAATCTT 22093 >seq8912 Length=57583 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || || || || || ||||| | ||||||||||||| Sbjct 44028 GCTGTGATCACTGTCCCCGCCTACTTCAACGATTCCCAACGGCTGTCTACTAAAGATGCC 43969 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| || |||| |||||||||||||| || || || || ||||| || Sbjct 43968 GGTGCCATTGCTGGTCTCGATGTGCTTCGTATTATCAACGAGCCCACCGCCGCTGCCATT 43909 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAA 550552 ||||| || |||| || || |||| ||||| Sbjct 43908 GCATACGGGCTTGGCGAAGCTAGTGAT-AAGAA 43877 >seq11162 Length=11478 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 |||| | || || || || || || || ||||| || || || || || || ||||| | Sbjct 2674 CAGTTGTCACCGTCCCCGCTTACTTCAACGACTCTCAGCGACAGGCAACCAAGGATGCCG 2733 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | | ||| |||||||| ||||| ||||| ||||||||||| || || || ||||| ||| Sbjct 2734 GTCTTATCGCTGGACTCAATGTCCTTCGAATTATCAATGAGCCAACCGCCGCTGCCATTG 2793 Query 550521 CATATGG 550527 |||| || Sbjct 2794 CATACGG 2800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028464919925350