Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7108 132 3e-25 seq10166 96.9 2e-14 seq11162 86.0 4e-11 >seq7108 Length=7890 Score = 132 bits (146), Expect = 3e-25 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || |||||||| ||| || || | ||| || ||||| | ||| Sbjct 6256 CGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTG 6197 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||||||||||| || || ||||| |||||||||||||| |||||||| ||| Sbjct 6196 CGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCT 6137 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| ||||| ||||| ||||| | || | | ||||| Sbjct 6136 TCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGA-CCTCAAG 6078 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || |||||||| |||||| | |||||| Sbjct 6077 GGTGATTGTTTTACCTGTGAGACT-ATAACGA 6047 Score = 109 bits (120), Expect = 4e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||||||||| | ||||| || |||||| || || || || || || || Sbjct 6556 ACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGT 6497 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||||||||| || |||||||| | |||||| ||||| || || || || Sbjct 6496 ACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCC 6437 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||||||| ||||| Sbjct 6436 TTCCTTGTCTTGGATCTT 6419 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || || || ||| ||| || | || || || || || || Sbjct 5667 ACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGT 5608 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||||||||||| |||||||| |||||||| || || ||||||||||| || Sbjct 5607 ACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCC 5548 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| || ||||| Sbjct 5547 TTCCTTGTCCTGTATCTT 5530 Score = 89.7 bits (98), Expect = 3e-12 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| || ||||| |||||| || || ||||| || ||||| | |||||| | Sbjct 5943 CAAG-TGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGA 5885 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||||||||||||||| ||||| |||||||| ||||| || || || || || || | Sbjct 5884 GTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGA 5825 Query 480685 TCTT 480688 |||| Sbjct 5824 TCTT 5821 >seq10166 Length=49910 Score = 96.9 bits (106), Expect = 2e-14 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| || | |||||| || ||||| | || || || || |||||| Sbjct 22229 CGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTT 22170 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| ||||| || |||||||| || | ||||| || || ||||| |||||| Sbjct 22169 CGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCT 22110 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 || |||||||||||||| |||||| |||||||| |||| Sbjct 22109 TCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAG 22067 >seq11162 Length=11478 Score = 86.0 bits (94), Expect = 4e-11 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 |||||||| | || || || ||| || || | ||| |||||||||| || ||| Sbjct 2103 GGTATTGACCTTGGCACCACCTACTCATGCGTGGGTGTATGGCAAAATGACCGGGTTGAA 2162 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||| ||||||| ||||| || | || || || ||||| || |||||| ||| | Sbjct 2163 ATCATTTCCAATGATCAAGGAAACCGCACCACTCCCTCATACGTGGCTTTTAATGACTCC 2222 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | ||| || || ||||| || || | |||| || || || | ||| | Sbjct 2223 GAGCGTCTGATCGGTGATGCCGCGAAGAACCAAGTCGCCATGAACCCCCACCACACTGTC 2282 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||| || || | ||||||| || || || || ||| || ||||||||||| ||| Sbjct 2283 TTTGACGCCAAGCGTCTGATTGGACGCAAATTCGAAGATGCCGAAGTCCAATCTGACATG 2342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267505107400820