Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11162 208 1e-48 seq8912 179 5e-40 seq7108 176 6e-39 seq10166 167 3e-36 >seq11162 Length=11478 Score = 208 bits (230), Expect = 1e-48 Identities = 217/280 (78%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 ||||||| || || || |||||||||| || || || |||||||| || ||||| || | Sbjct 2674 CAGTTGTCACCGTCCCCGCTTACTTCAACGACTCTCAGCGACAGGCAACCAAGGATGCCG 2733 Query 195771 CTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | ||| || || || || |||| || ||||||||||||| ||||| || ||||| ||| Sbjct 2734 GTCTTATCGCTGGACTCAA-TGTCCTTCGAATTATCAATGAGCCAACCGCCGCTGCCATT 2792 Query 195830 GCTTATGGTCTGGACAAGAA--CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 || || ||| |||||||||| | | | | ||| |||||| |||||||| ||||| | Sbjct 2793 GCATACGGTTTGGACAAGAAGGCTACG--GGAGAGCGAAATGTTTTGATCTTCGATCTAG 2850 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 | || || || ||||||||||| ||||| | |||||||| || || || ||||| |||| Sbjct 2851 GAGGAGGCACTTTTGATGTCTCCCTTCTTACTATTGAAGAGGGCATCTTTGAAGTCAAGG 2910 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| ||||| || ||||| ||||||||||| || || Sbjct 2911 CGACTGCCGGTGACACCCATCTTGGTGGTGAAGACTTTGA 2950 Score = 152 bits (168), Expect = 7e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | ||||| || | || || || |||||||| || ||||||||||||||||| || Sbjct 2096 AGCTGTCGGTATTGACCTTGGCACCACCTACTCATGCGTGGGTGTATGGCAAAATGACCG 2155 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || || | ||||| ||||||||||| || ||||| || ||||| || |||| Sbjct 2156 GGTTGAAATCATTTCCAATGATCAAGGAAACCGCACCACTCCCTCATACGTGGCTTTTAA 2215 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 || || ||||| | || |||||||| || || || || |||||||| | | Sbjct 2216 TGACTCCGAGCGTCTGATCGGTGATGCCGCGAAGAACCAAGTCGCCATGAACCCCCACCA 2275 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 |||||||||||||| |||||||| ||||| ||||| || Sbjct 2276 CACTGTCTTTGACGCCAAGCGTCTGATTGGACGCAAATT 2314 Score = 132 bits (146), Expect = 6e-26 Identities = 186/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||| | ||||| | | ||||| || || |||||||| || |||||||| ||| | || Sbjct 3100 GCTGTCCGTCGTTTGCGCACTGCTTGCGAGCGTGCCAAGCGTACTCTCTCCTCTGCCGCC 3159 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 ||||| | || ||||| || | ||||| || ||||| ||||| || | | || Sbjct 3160 CAAACTTCCATCGAAATTGACTCTCTCTTTGAGGGTATTGATTTCTACACCTCCTTGACT 3219 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCT---GATTTGTTTAGGAAGTGTATGGAACCTGTT 196237 ||||| ||||| |||||| | || | ||| | || |||||| |||||| || || Sbjct 3220 CGTGCCCGTTTCGAAGAGCT---CTGTCAAGATCTCTTCAGGAAGACTATGGAGCCCGTC 3276 Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297 ||| | || ||||| ||| | ||||| || ||| |||| ||| | || || || ||||| Sbjct 3277 GAAAAGGTTCTTCGGGACTCCAAGATCGACAAGGCTAACGTTCACGAGATCGTACTTGTC 3336 Query 196298 GGAGGATCAACCCGTATTCC 196317 || || || ||||||||||| Sbjct 3337 GGTGGGTCGACCCGTATTCC 3356 >seq8912 Length=57583 Score = 179 bits (198), Expect = 5e-40 Identities = 534/817 (65%), Gaps = 20/817 (2%) Strand=Plus/Minus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 ||| ||||| | || || || ||||||| | | ||| | ||||||||||| ||| | Sbjct 44112 TTTTCTCCCCAGGAGATCTCCGCTATGGTACTTACCAAGCTCAAGGAGACTGCCGAAACC 44053 Query 195686 TTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 | || || ||||| | || || | ||||| || || ||||||| ||||| Sbjct 44052 AAACTCGGCAAGGAGGTGAAGAAGGCTGTGATCACTGTCCCCGCCTACTTCAACGATTCC 43993 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTAT 195804 ||||| | | | || || || || | ||| ||||| ||||| | ||| ||| | ||||| Sbjct 43992 CAACGGCTGTCTACTAAAGATGCCGGTGCCATTGCTGGTCTCGA-TGTGCTTCGTATTAT 43934 Query 195805 CAATGAACCAACAGCGGCTGCAATTGCTTATGGTC-TGGACAAG--------AACAAG-- 195853 ||| || || || || ||||| ||||| || || | ||| ||| || ||| Sbjct 43933 CAACGAGCCCACCGCCGCTGCCATTGCATACGGGCTTGGCGAAGCTAGTGATAAGAAGGA 43874 Query 195854 GACGAA-GATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || ||| || || || | || ||||| | || |||||||| || ||||| || || Sbjct 43873 GAAGAAGGAGCGAACGGTCCTAATTTTTGACTTGGGAGGTGGTACCTTCGATGTATCTCT 43814 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 ||| || | ||||||| | ||| || || ||||| || ||||| || || | || Sbjct 43813 CCTCTCGATCGCAGGTGGTGTTTTCACTGTTAAAGCTACCGCCGGTGACACCCACTTGGG 43754 Query 195973 TGGTGAAGATTTCG---ATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAA 196029 || || || |||| |||| || || || || |||||| ||||| Sbjct 43753 AGGAGAGGACTTCGACAATGC---CCTCCTTGAACACTTCAAGAGCGAGTTCAAGCGAAA 43697 Query 196030 GAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGA 196089 | ||| || || || || | | ||||| ||||| ||| | ||||||| || Sbjct 43696 AACCAAGCTTGACATCGACGGTGATGCCCGCGCTCTCCGTCGTCTTCGCTCTGCATGCGA 43637 Query 196090 ACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTT 196149 || || |||||||| || || || | ||||| | ||| ||| ||||||| | || Sbjct 43636 GCGAGCAAAACGAACACTTTCCTCCGTCACCCAAACTACGGTCGAGGTTGATTCTCTTTT 43577 Query 196150 TGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGA 196209 | || | || |||| | | || | || || || || |||||| | ||| || | Sbjct 43576 CCAGGGCACCGATTTCTCGTCTGCCATCTCTCGAGCTCGATTCGAAGAGATCAACGCTCA 43517 Query 196210 TTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAA 196269 || | | |||| || || || | ||||| ||||| ||||| || || Sbjct 43516 AACCTTCCGCTCCACTCTGGATCCCGTCGATAAGGTACTCAAGGACGCCAAGATCGACAA 43457 Query 196270 GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACA 196329 ||| |||||||| || || |||||||| || ||||| || || |||||||| || ||| Sbjct 43456 GTCCAAGGTTGAGGACATCGTCCTTGTCGGTGGATCTACACGGATTCCGAAAATCCAATC 43397 Query 196330 GATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389 | | ||| ||||||| | | || ||||| | |||||||| ||||| || Sbjct 43396 CCTCGTATCTGACTTCTTCGGTGGGCGCCAATTGAACAAGAGCATCAACCCCGATGAGGC 43337 Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 || ||||| ||||| || || ||||| || ||||| Sbjct 43336 CGTCGCTTACGGTGCAGCTGTCCAGGCCGCAGTTCTC 43300 >seq7108 Length=7890 Score = 176 bits (194), Expect = 6e-39 Identities = 168/214 (79%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| ||||| || || |||||| | || |||||||| || ||||| ||||| ||| | || Sbjct 5466 CCTGACTGGTAAGACCATCACCTTGGAAGTTGAGTCCTCGGACACCATCGACAACGTGAA 5525 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| || || |||||||||||||| || || ||||| || ||||| |||||||| Sbjct 5526 GGCGAAGATACAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTTATCTTTGCTGG 5585 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || || |||||||| || |||||||| || || |||||| | |||||||| ||||| || Sbjct 5586 CAAGCAACTTGAAGACGGCCGTACCCTTGCGGACTACAACATCCAAAAGGAATCTACCCT 5645 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 ||||| ||||| | || || || || ||||| Sbjct 5646 CCACCTCGTTCTCCGTCTCCGTGGAGGAATGCAA 5679 Score = 172 bits (190), Expect = 7e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || ||||| |||||||| ||||| || ||||| ||||| || || ||| | || || Sbjct 6359 ACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGACC 6418 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| ||||| ||||||||||| || |||||||||||||| | |||||||| || || Sbjct 6419 AAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGCAAG 6478 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || ||||||||||| |||||||| || || |||||| |||| || || || ||||| ||| Sbjct 6479 CAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTTCAC 6538 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 | || || | ||||| || || Sbjct 6539 TTGGTACTCCGTCTTCGTGGAGG 6561 Score = 165 bits (182), Expect = 1e-35 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||| Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAGGCC 5238 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||||||||| || || || || || ||||| ||| | || ||||| || ||| Sbjct 5239 AAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAAA 5298 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACA 172064 ||| | ||||| || || |||||||| || |||||| | ||||| |||||||| || || Sbjct 5299 CAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCA 5357 Score = 161 bits (178), Expect = 1e-34 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || ||||| |||||||| ||||| || || || || || || || ||| |||| Sbjct 6057 CTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAG 6116 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||||||||||| |||||||||||||| || ||||| ||||| || ||||| || || Sbjct 6117 ACCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGGC 6176 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 || || |||||||| || || || | ||||| ||||| | |||||||||||||| || Sbjct 6177 AAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCTT 6236 Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || || || || | ||||| || || ||||| Sbjct 6237 CATCTGGTCCTCCGCCTTCGAGGAGGAATGCAA 6269 Score = 149 bits (164), Expect = 8e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || ||||||||||| ||||| ||||| || ||||| || || || |||| Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||| || Sbjct 4951 GCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGA 5010 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| || ||||| || ||||| | ||||| ||||| |||| |||||||| || | Sbjct 5011 AAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTG 5070 Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | | ||||| |||||| Sbjct 5071 CATCTGGTGTTGCGACTTCGTGGTGGT 5097 Score = 131 bits (144), Expect = 2e-25 Identities = 145/192 (76%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || || || || ||||| || || || || ||||| ||||| || || || | || Sbjct 5757 CCTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAA 5816 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 ||||||| || ||||| || ||||| || |||||||| || || || ||||||||||| Sbjct 5817 GACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGG 5876 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 || || || |||||||| || || || || ||||||||| |||| || || || || || Sbjct 5877 AAAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACT 5936 Query 172062 ACACCTTGTTCT 172073 || |||| ||| Sbjct 5937 CCA-CTTGGTCT 5947 >seq10166 Length=49910 Score = 167 bits (184), Expect = 3e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || || |||||| | || ||||| || || ||||| ||||||||| | ||| Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||||||||| ||||| |||||||| || || || ||||| | || ||||| ||| Sbjct 21799 GCCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGGT 21858 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 ||||| || || ||||| ||||| | || || |||||| | |||||||||||||| | Sbjct 21859 AAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTTG 21918 Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || | | ||||| |||||| Sbjct 21919 CACCTGGTCTTGCGACTTCGAGGTGGT 21945 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||||||||| || || ||||| || || |||||||| || ||||| ||||||||| | || Sbjct 22319 CCTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAA 22378 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 ||||||||||| || || |||||||| || || || |||||||| || || ||||| || Sbjct 22379 GGCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGG 22438 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCT 172061 ||||| |||||||| || || || || || || || || | ||||||||||| || || Sbjct 22439 CAAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCT 22498 Query 172062 ACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || | ||||| | || || ||||| Sbjct 22499 CCATTTGGTTCTTCGACTCCGTGGTGG 22525 Score = 138 bits (152), Expect = 1e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || |||||||| ||||| | || || ||||| || ||||| || || || |||| || Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGCT 22092 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||| || ||||| || || || || ||||||||| | || |||||||| ||| Sbjct 22093 AAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAA 22152 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACA 172064 || || |||||||| || || || || || |||||| | || || ||||| ||||| || Sbjct 22153 CAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCA 22211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657733171154800