Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7108 109 1e-18 seq10166 102 1e-16 >seq7108 Length=7890 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||| | ||||||||||| || | ||| || |||||| Sbjct 5105 ATTTGCATACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTG 5046 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | || || | ||||||||||||||| || || | |||||| Sbjct 5045 TAGTCAGCCAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGA 4986 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| ||||| | || | ||| ||| || || ||| Sbjct 4985 TCCGGTGGGATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAA 4926 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||| || || || || ||||| || || || || Sbjct 4925 GACTCGACCTCCAGGGTGATAGTCTTGCCCGTGAG 4891 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||| | || || |||||||| | |||| ||| || ||||| Sbjct 6272 AATTTGCATTCCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATT 6213 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | || || | ||| || ||||| ||||| | | ||||| Sbjct 6212 GTAGTCAGCCAAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTG 6153 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| || ||||| || ||||| || | || ||| ||||| || Sbjct 6152 ATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGA 6093 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 || || || || || || || ||||||||||| || Sbjct 6092 TGATTCGACCTCAAGGGTGATTGTTTTACCTGTGAG 6057 >seq10166 Length=49910 Score = 102 bits (112), Expect = 1e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||| | ||| || |||| ||| | || | |||||| || || |||||| Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | |||||| || ||||| || |||| || || || ||| Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || || | || | ||| |||||| || || ||||| Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCG 22059 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| | ||| || ||||| ||||| Sbjct 22058 ACTTCCAAAGTGATCGTTTTTCCTGT 22033 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||||| || ||||| | | |||||| |||| ||| | || | ||| || ||||| Sbjct 22535 AATTTACATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATT 22476 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | |||| | || || | |||||| || ||||| || | | || || Sbjct 22475 ATAGTCCGCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTG 22416 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| || || || |||| || | || || || || || Sbjct 22415 GTCCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGA 22356 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||||||||| ||||| || || ||||| || || Sbjct 22355 GGACTCAACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899477674138800