Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10166 100 6e-16 seq7108 84.2 4e-11 >seq10166 Length=49910 Score = 100 bits (110), Expect = 6e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| || || | || ||||| | ||| | |||||| ||| || || || Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||| ||||||||||| |||| || || || || Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| || ||||| |||| || || || || Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCG 22059 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 ||||| | ||| || ||||| || || ||| Sbjct 22058 ACTTCCAAAGTGATCGTTTTTCCTGTCAAT 22029 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||| || || || | || || |||| ||| || ||| || || || Sbjct 21947 ATACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCG 21888 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||||||||| ||||||||||| | ||||| || || Sbjct 21887 GCCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGA 21828 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| || ||| || | || || ||||| Sbjct 21827 GGAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCA 21768 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| | || ||||| || || || Sbjct 21767 ACTTCCAAGGTGATGGTCTTGCCTGT 21742 >seq7108 Length=7890 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | || | ||||| || || ||||| | | || || Sbjct 5954 AGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGC 5895 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||| || |||||||| || | | ||||||||| || || || || ||| Sbjct 5894 CCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCT 5835 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || || | || ||||| || | || |||||||||||||| ||||| Sbjct 5834 TTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTG 5775 Query 192499 ATGGTTTTACCAGT 192512 ||||| || || || Sbjct 5774 ATGGTCTTGCCGGT 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984281776490250