Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10166 100 5e-16 seq7108 86.0 1e-11 >seq10166 Length=49910 Score = 100 bits (110), Expect = 5e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||||| | || ||||| | ||| | |||||| || || || || Sbjct 22238 ATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCG 22179 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | |||||| |||||||| || |||| || ||||| || Sbjct 22178 GCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGA 22119 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| || ||||| ||||| || || || || Sbjct 22118 GGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCG 22059 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAAT 172049 ||||| | ||| || ||||| || || ||| Sbjct 22058 ACTTCCAAAGTGATCGTTTTTCCTGTCAAT 22029 >seq7108 Length=7890 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || ||||| | | || || | || || | ||| || ||||||||| Sbjct 5927 TCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAA 5868 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | |||||| || || || || || |||||||| || || || | || ||||| Sbjct 5867 ATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTG 5808 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 || || || |||||||||||||| ||||| ||||| || || || Sbjct 5807 TCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGT 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904958197347000