Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1054 123 7e-23 seq11118 122 3e-22 >seq1054 Length=9129 Score = 123 bits (136), Expect = 7e-23 Identities = 188/261 (72%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 60108 CGGGAAATATAGCCCGAGTAATCTTGGATA-ATTGTGTGAAAATATACCTCTCGGATGCT 60166 ||||||| ||| | ||||| ||||| | |||| || ||||||||||| | || || Sbjct 3700 CGGGAAA-ATAACTCGAGTGATCTTTTCCACATTG-GTAAAAATATACCTTGCCGAGGCA 3757 Query 60167 GCGTCCTTGCCACCCATAAG-ACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAAT 60225 || ||||| || ||| | | ||| || ||||||||||| |||||| | || || || Sbjct 3758 GCATCCTTACC-CCCTGAGGCACGAGTACCAAATTGTCCATTTGGCGACAGTACGTTGAT 3816 Query 60226 GTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTC 60285 |||||| || || || ||||||||||| || ||||| | | |||| || ||||| Sbjct 3817 GTTGTTGCTTCCGACAAAGTTTTGAGCGAGTCCCACAATTGTCTGAGTTAAGCTTGCTTC 3876 Query 60286 ACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 ||||| |||||| | |||||||| ||| ||| || | || || || || || ||||| Sbjct 3877 GCCGTGGTGATATGCCGAATGTTCAGAACAATAACCTCCCAACTGGGCAACCTTGATTTC 3936 Query 60346 GGAGTGGAGTTTTTTCTTGAA 60366 || | | |||| |||||| Sbjct 3937 GGCTTTCAATTTTCGCTTGAA 3957 >seq11118 Length=16599 Score = 122 bits (134), Expect = 3e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| ||||||||||| || |||||||| || || || || || Sbjct 4780 TCTTCCAAAGCCTTGAGCAAACGACGCTGGATGTAACCAGTCTCAGCAGTCTTGACTGCA 4839 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| || || | ||||| |||| |||||||| || | ||| | || | Sbjct 4840 GTATCAATCAGTCCCTCTCGACCTGCCATGGCATGGAAAAAGAACTCCTGAGGGGTCAAT 4899 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||| | || || || || |||| || || || | ||| |||||| Sbjct 4900 CCTCGTAAGTATGAGTTTTCGACAAATCCCCGCGATTCAGGTGAGTAATCGTCCTTGGTG 4959 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | | | | |||| || ||||||||||| || |||||| |||| Sbjct 4960 AAATGCGGTAGCGTTCGATATTTAAAGCCATAGGGGATACGCTTCCCTTCAACGGACTGC 5019 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||||| |||| | |||||| |||||||| Sbjct 5020 TGTCCCACACACGCAGACATCTGGGAAATATT 5051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471521251825955