Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7214 102 1e-15 seq7434 95.1 1e-13 seq10708 87.8 2e-11 >seq7214 Length=40959 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 ||| |||||| | || || |||| |||||||||||||| |||||||||| |||| | Sbjct 6852 GGCTTCGGTGGCAATCCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATTAACATAGC 6911 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 |||||| ||||| || ||| |||||||||||||| || || |||||||| Sbjct 6912 CTTGTTCGAGATCCCAGTGTCCGGGTGCACCTGCTTCAGGACTTTGTAGAT 6962 >seq7434 Length=10174 Score = 95.1 bits (104), Expect = 1e-13 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 |||||||||||| | |||||||| || ||||| |||| | ||| | | ||||| ||| Sbjct 6768 GGACGCCACAAGATAATCATCCTAGATGAGGCGGACTCGATGACGGCTGGCGCCCAACAG 6709 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 || ||||| ||| ||||| | || | ||||||||||| || || |||||||||||| Sbjct 6708 GCGCTGCGACGCACGATGGAGATATACTCGAACACGACGCGGTTCGCGCTGGCGTGCAAC 6649 Query 1574187 -ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || | | | | |||||||| | |||| || || || || || || || Sbjct 6648 AACAGCAGC-AAGATCATCGAGCCAATCCAGAGCCGATGTGCGATCCTTCG 6599 >seq10708 Length=34815 Score = 87.8 bits (96), Expect = 2e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTG-CCGGCAGGCCTCGGCGA 19105 |||||||| || |||||||||||||| || || | || ||| | || || || || Sbjct 29349 GACAGCATTGGAGGCACGGTGACGTGTGT-AATCAAGAATTGCCCGACGGGTCTGGGGGA 29407 Query 19106 GCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 ||| || || || || | || ||| || ||||| |||||| ||||||| || || || Sbjct 29408 GCCATGTTTCGATAAACTGGAAGCCAAACTGGCCCATGCCATGATGTCGATTCCCGCAAC 29467 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTT 19192 ||| || ||||| |||||||| ||||| Sbjct 29468 CAAAGGGTTCGAAATTGGCAGTGGGTT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105849553506655