Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7108 123 2e-23 seq10166 105 6e-18 >seq7108 Length=7890 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || || || || || ||||||||| | | ||||| | || | || || Sbjct 5758 CTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAG 5817 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| || ||||| || || |||||||||||||| ||| | || ||||| || Sbjct 5818 ACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGA 5877 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || || || || ||| | | | || | ||||| |||||||| || ||||| ||||| Sbjct 5878 AAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTC 5937 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||||| | |||||||| Sbjct 5938 CACTTGGTCTTGCGTCTCCGCGGAGG 5963 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 || || ||||| || || || || || ||| | | ||||| | || |||| || || Sbjct 6359 ACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGACC 6418 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||| ||||| || || |||||||| ||||||||||| |||||||| || Sbjct 6419 AA-GATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGCAA 6477 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || || || ||| | | | || | || || |||||||| || ||||| || || || Sbjct 6478 GCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTTCA 6537 Query 24907 CTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||| | || | || ||||||| Sbjct 6538 CTTGGTACTCCGTCTTCGTGGAGGCG 6563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || |||||||| || || || || || |||||||| | || | || || Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAGGCC 5238 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| ||||| || || || || ||||| || || || || ||||||||||| || ||| Sbjct 5239 AAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAAA 5298 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||| || | | | | | || || ||||| ||||| || || ||||| || Sbjct 5299 CAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCAT 5358 Query 24908 TTGGT 24912 ||||| Sbjct 5359 TTGGT 5363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || ||||| || || || || || | | ||||| | || | || || Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 || || |||||||| ||||| || || || ||||||||||| |||||||||||||| Sbjct 4951 GCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGA 5010 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| || | | || | || || || ||||| ||||| || || | Sbjct 5011 AAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTG 5070 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| | || || || Sbjct 5071 CATCTGGTGTTGCGACTTCGTGGTGG 5096 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783 || || |||||||| || || || || || ||| | | || || | || |||| || Sbjct 6057 CTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAG 6116 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 || || ||| |||||||| ||||| || ||||| |||||||||||| | || || ||||| Sbjct 6117 ACCAA-GATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGG 6175 Query 24844 GAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 || || || || || | | | || | || || || || |||||||| || || || Sbjct 6176 CAAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCT 6235 Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||| | || | || ||||| Sbjct 6236 TCATCTGGTCCTCCGCCTTCGAGGAGG 6262 >seq10166 Length=49910 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783 || || || || || || || | ||||| ||| | | ||||| | || |||| |||| Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 | || ||| |||||||| || || || ||||| || |||||||| || ||||||||||| Sbjct 21799 GCCAA-GATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGG 21857 Query 24844 GAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 ||||| || |||||| | | || | || || ||||| |||||||| || || | Sbjct 21858 TAAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTT 21917 Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||| |||||| | || || || Sbjct 21918 GCACCTGGTCTTGCGACTTCGAGGTGG 21944 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || || | ||||| || || | ||||| | || | || || Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGCT 22092 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| || ||| Sbjct 22093 AAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAA 22152 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || ||| | ||| || | || || ||||| || || || || || || || Sbjct 22153 CAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCAT 22212 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | ||| | || || || Sbjct 22213 TTGGTCCTCCGACTACGAGGGGG 22235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || ||||| || || || || ||||| || || | ||||| | || | || || Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAG 22379 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||| || ||||||||||| || || || || || |||||| | |||||||| || Sbjct 22380 GCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGC 22439 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| || || || ||| || | || ||||| || |||||||| || || || Sbjct 22440 AAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTC 22499 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | ||| | || || || Sbjct 22500 CATTTGGTTCTTCGACTCCGTGGTGG 22525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449809223240200