Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7434 104 4e-16 seq7214 96.9 5e-14 >seq7434 Length=10174 Score = 104 bits (114), Expect = 4e-16 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||||||| | |||||||| |||||||| |||| | ||| | | ||||| ||| Sbjct 6768 GGACGCCACAAGATAATCATCCTAGATGAGGCGGACTCGATGACGGCTGGCGCCCAACAG 6709 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 || || ||| || ||||| | ||| | |||||||||||||| |||||||| |||||| Sbjct 6708 GCGCTGCGACGCACGATGGAGATATACTCGAACACGACGCGGTTCGCGCTGGCGTGCAAC 6649 Query 2019324 -ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368 || | | | | ||||||| | |||||||||| || || ||| Sbjct 6648 AACAGCAGC-AAGATCATCGAGCCAATCCAGAGCCGATGTGCGATC 6604 >seq7214 Length=40959 Score = 96.9 bits (106), Expect = 5e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 ||| |||||| | || || |||| |||||||||||||| ||||||||||| |||| | Sbjct 6852 GGCTTCGGTGGCAATCCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATTAACATAGC 6911 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||| ||||| || ||| |||||||||||||| || || ||||| Sbjct 6912 CTTGTTCGAGATCCCAGTGTCCGGGTGCACCTGCTTCAGGACTTTGTA 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914574723773885