Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10166 132 4e-26 seq7108 120 2e-22 >seq10166 Length=49910 Score = 132 bits (146), Expect = 4e-26 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| ||||| ||||| || ||||| || || || | || || | Sbjct 22223 CGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCA 22164 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||||||| | ||||||| |||||| || || || || || |||||| Sbjct 22163 TCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTG 22104 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | |||||| | || | ||||||||| || ||||| | ||| || Sbjct 22103 TCTTG-AATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGAT 22045 Query 29751 AGTTTTGCCAGTTAA 29765 ||||| || || || Sbjct 22044 CGTTTTTCCTGTCAA 22030 Score = 111 bits (122), Expect = 1e-19 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||||||| |||||||| || ||||| || ||||| ||||| | || ||| Sbjct 22513 CGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCGACCG 22454 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||||||||| ||| | || | | |||||| ||||| || || || |||||| Sbjct 22453 TCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTG 22394 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || || | || | |||||||| || ||||||||||| || Sbjct 22393 TCCTG-AATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGAT 22335 Query 29751 AGTTTTGCCAGTTAAGG 29767 || || |||| ||||| Sbjct 22334 CGTCTTACCAG-TAAGG 22319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||| || | || || || ||||| ||||| || || || | || ||| | Sbjct 21932 CGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGACCA 21873 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || ||| | || || | ||| || || || ||||| ||||| ||| Sbjct 21872 TCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCCCTCCTTG 21813 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||| || | || | ||||| ||| ||| ||||| | || || Sbjct 21812 TCTTG-AATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAAGGTGAT 21754 Query 29751 AGTTTTGCCAGT 29762 || ||||| || Sbjct 21753 GGTCTTGCCTGT 21742 >seq7108 Length=7890 Score = 120 bits (132), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 6561 CCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCC 6502 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || ||||| ||||| ||| | ||||| | ||||||||| ||||| Sbjct 6501 AGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGG 6442 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| || || || || || | || | ||||| || ||| || Sbjct 6441 ATGCCTTCCTTGTCTTG-GATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGAC 6383 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || || || ||||| || || ||| Sbjct 6382 CTCCAGGGTGATGGTTTTCCCCGTCAAG 6355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385145420290815