Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq7108 118 1e-21 seq10166 107 2e-18 >seq7108 Length=7890 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || || || | ||| |||||||| || |||||||||||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| | ||||||||||| || |||||| | || ||||| || ||||||||||| Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| ||||| || || || || | | || | ||||| | | ||||||| Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 137365 TCAACAGTCACCGTCTTGCCGGT 137387 || | ||| | ||||||||||| Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGT 5761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || || |||| || |||||||| || |||||||| || Sbjct 6562 GCCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGC 6503 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||||| ||||| || || ||| | |||| ||||||||||||||| || Sbjct 6502 CAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGG 6443 Query 137304 TATGCCTTCTTTGTC 137318 |||||||| ||||| Sbjct 6442 GATGCCTTCCTTGTC 6428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||| | || ||||| | |||||| |||||||| |||||||| ||| Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||||| || ||| |||||| || ||||| || ||||| Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| || || | | || | ||||| | || || || Sbjct 5261 ATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACC 5202 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAA 137390 |||| || | |||||||||||||| Sbjct 5201 TCAAGGGTAATAGTCTTGCCGGTCAA 5176 >seq10166 Length=49910 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||||| || | || ||||||| || || ||||| || |||||||| ||| | Sbjct 22235 CCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCC 22176 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | |||||||||||||| |||||| |||||| |||||||| || ||||| Sbjct 22175 AGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGG 22116 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || || | | || | ||||| | || || ||| Sbjct 22115 ATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACT 22056 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAAT 137391 || | ||| | ||| || || |||||| Sbjct 22055 TCCAAAGTGATCGTTTTTCCTGTCAAT 22029 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCT 137259 ||| ||||| | || || || ||||| || || || || || || |||| |||| Sbjct 22508 AACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGT--TCGACCGTCT 22451 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || |||||||| || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 22450 TCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTCC 22391 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 ||| || || | | || | ||||| | || || ||||||| ||| | |||| Sbjct 22390 TGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGTC 22331 Query 137380 TTGCCGGT 137387 || || || Sbjct 22330 TTACCAGT 22323 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||| || | || | ||||| || ||||| |||||||| ||| | Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || |||||||||||||| ||| |||| | ||||| || || ||||| Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| ||| || ||| | | || | |||||| | | ||| ||| Sbjct 21824 ATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACT 21765 Query 137365 TCAACAGTCACCGTCTTGCCGGT 137387 || | || | |||||||| || Sbjct 21764 TCCAAGGTGATGGTCTTGCCTGT 21742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488448031638000