Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10166 156 8e-33 seq7108 136 8e-27 >seq10166 Length=49910 Score = 156 bits (172), Expect = 8e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || ||||| || |||||||| || || || || | ||| ||| || Sbjct 22223 CGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCA 22164 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||| ||||||||||| | || ||| || |||||||| |||||||| || Sbjct 22163 TCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTG 22104 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || ||||| ||||| || ||| | || ||||||||||| ||| Sbjct 22103 TCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATC 22044 Query 82776 GTCTTGCCTGTCAA 82789 || || |||||||| Sbjct 22043 GTTTTTCCTGTCAA 22030 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | |||| || | ||||| ||||| || || || || || || || | Sbjct 21946 TACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGG 21887 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||| || || |||||||| || |||||||||| | |||||| ||||||| Sbjct 21886 CCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAG 21827 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| ||||| || || || ||||| || || ||| | Sbjct 21826 GAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAA 21767 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||||| || || ||||||||||| Sbjct 21766 CTTCCAAGGTGATGGTCTTGCCTGT 21742 >seq7108 Length=7890 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || ||||| || || ||||||||||| || || ||||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| ||||| ||||||||||| || || | |||||||| ||||| Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| || ||||| | || ||||| ||||| || || | ||||||| Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 |||| ||| || |||||||| || Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGT 5761 Score = 116 bits (128), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||| || || || ||||| ||||| || |||| | | | |||||||| |||||| Sbjct 5072 TGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCCGTCTTCCAGTTGT 5013 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| |||||||| | | ||||||||| || || || |||||||| |||||||| || Sbjct 5012 TTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCCTTGTCTTGAATTTTC 4953 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| ||||| || || || || || |||| || || |||||||| || Sbjct 4952 GCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATAGTCTTGCCCGT 4894 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | ||| || |||||||| || || || || || || | Sbjct 5672 CCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCA 5613 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| ||||| || ||||||||||| || | || || || ||||| Sbjct 5612 AGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGA 5553 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || || | || ||| Sbjct 5552 ATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACT 5493 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCA 82788 ||||| || || ||||| || |||| Sbjct 5492 TCCAAGGTGATGGTCTTACCAGTCA 5468 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || || ||||| ||||| ||||| || || || || || | Sbjct 5383 TACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGG 5324 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||||| | ||||| || |||||||| | || || || || |||| Sbjct 5323 CGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAG 5264 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||||||||| || || || || || || || || | || | Sbjct 5263 GGATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAA 5204 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 | || | || || |||||||| |||||| Sbjct 5203 CCTCAAGGGTAATAGTCTTGCCGGTCAAC 5175 Score = 107 bits (118), Expect = 4e-18 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 82569 TCCATTTATCACCTA----CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTT 82624 ||||| |||| ||| ||||| | | ||| || || ||||| ||||| |||||||| Sbjct 6580 TCCATGAATCAACTATACGCCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTT 6521 Query 82625 CTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAG 82684 ||| || || || || | || | | || ||||| ||||| || || ||||| || | Sbjct 6520 CTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAA 6461 Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | ||| ||||| || || || |||||||| ||||| ||||| | || || || ||||| Sbjct 6460 ACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAAT 6401 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||| || | ||| || |||| || || || || || ||||| Sbjct 6400 CGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGTCAA 6356 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || || || | || || ||||| || || || ||||| || |||| Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||||| ||||| || || || || || || | ||||||||| ||||| Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| | || || || ||||| ||||| | ||| || Sbjct 6142 ATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACC 6083 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 || | || || || || ||||| Sbjct 6082 TCAAGGGTGATTGTTTTACCTGT 6060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981629510627385