Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7108 93.3 4e-14 seq10166 89.7 5e-13 >seq7108 Length=7890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || ||||||||| ||| ||| | || ||||| ||||| || Sbjct 5933 GTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCA 5874 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || ||||||| ||||| || |||||||||||||| || || || |||||| ||| Sbjct 5873 GCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTC 5814 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | | |||| ||||| | | || || || | |||| ||| |||||||| || Sbjct 5813 ACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGTGAG 5758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| || || |||||||| || ||| ||| | ||| || || || Sbjct 6239 ATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTGCGCCCGTCTTCAAGTTG 6180 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| ||||||| || || || || ||||| |||||||||||||| ||||| Sbjct 6179 CTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTT 6120 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| || || | | || || || | ||||| ||||| || || Sbjct 6119 GGTCTTGACGTTGTCAATGGTATCCGATGATTCGACCTCAAGGGTGATTGTTTTACCTGT 6060 Query 133637 CAGA 133640 ||| Sbjct 6059 GAGA 6056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || ||| || | | | || || || |||||||| Sbjct 6531 GTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCA-TCTTCAAGTTGCTTGCC 6473 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||| ||||| ||||||||||||||||| |||||| ||| Sbjct 6472 GGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTT 6413 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | |||| |||||| | | || || || | ||||| |||||| || |||| Sbjct 6412 CACGTTGTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGTCA 6357 >seq10166 Length=49910 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||||||||| || ||||| ||| ||| || | || ||||| Sbjct 22214 AAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCATCTTCGAGT 22155 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || | || | || |||||||| |||||||| ||||| ||||| ||| Sbjct 22154 TGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATC 22095 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | || ||| || || | |||| ||||| || Sbjct 22094 TTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATCGTTTTTCCT 22035 Query 133635 GTCA 133638 |||| Sbjct 22034 GTCA 22031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483325838026600