Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10166 134 3e-26 seq7108 96.9 8e-15 >seq10166 Length=49910 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||||||||||||||||||||| || |||||||| | || || ||| Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGCT 22092 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||||||||| || ||| ||| || | ||||| || || || Sbjct 22093 AAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAA 22152 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || | |||||||| | ||| ||||||| |||||| ||||||||||||| |||||||| Sbjct 22153 CAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCA 22211 Score = 123 bits (136), Expect = 6e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATCAGTAAA 206249 |||||||| || || ||||| |||||||| ||| ||| ||||| |||| | | |||| Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGG 206309 || || ||||||||| || || || ||| || ||| ||| | | ||||| ||||| Sbjct 21799 GCCAA-GATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGG 21857 Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 || || | || ||||| | || |||||||| |||||| |||| || |||||||| | Sbjct 21858 TAAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTT 21917 Query 206370 TCACCTTGTTTTGAGACTTCGA 206391 ||||| || ||| |||||||| Sbjct 21918 GCACCTGGTCTTGCGACTTCGA 21939 >seq7108 Length=7890 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 |||||||| ||||| ||||| | || || ||| || || || | || || ||| Sbjct 6057 CTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAAG 6116 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||||||||| || ||||| ||| ||||| ||| | || || |||||||| Sbjct 6117 ACCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGGC 6176 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| | ||||| || | |||||||| || ||||| |||| || |||||||| ||| Sbjct 6177 AAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCTT 6236 Query 206371 CACCTTGTTTTGAGACTTCGA 206391 || || || | | |||||| Sbjct 6237 CATCTGGTCCTCCGCCTTCGA 6257 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | | || || ||||| |||||||| || |||| ||| |||||||||||||| Sbjct 6257 TCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGT 6198 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | || ||||| || ||||| |||||||| || || ||||||||| Sbjct 6197 GCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGA 6152 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| || || || | || ||||| ||||| | ||| ||||||||||| || Sbjct 5090 CGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTA 5031 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | || |||||||| || |||||||| ||||| | |||||||||| Sbjct 5030 CGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGA 4986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||| || || || |||||| ||||||| ||| || ||||| | || || ||| Sbjct 5758 CTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAG 5817 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || ||||| || || || || || | || || || || ||| Sbjct 5818 ACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGA 5877 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| | |||||||| | ||| |||||||||||||| | |||||||| || || || Sbjct 5878 AAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTC 5937 Query 206371 CACCTTGTTTTGAGACTTCG 206390 ||| | || ||| | || || Sbjct 5938 CACTTGGTCTTGCGTCTCCG 5957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181582842228515