Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7434 98.7 1e-14 seq7214 87.8 3e-11 >seq7434 Length=10174 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGT-GTTGCAGGC 332934 || ||||| ||||| |||||||| | | |||||||| | ||| | || |||||| || Sbjct 6599 CGAAGGATCGCACATCGGCTCTGGATTGGCTCGATGATC-TTGCTGCTGTTGTTGCACGC 6657 Query 332935 CAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGC 332994 ||| || ||||||||||| || | | | ||||| || || || ||||||||||| Sbjct 6658 CAGCGCGAACCGCGTCGTGTTCGAGTATATCTCCATCGTGCGTCGCAGCGCCTGTTGGGC 6717 Query 332995 CGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 | | ||| | |||| ||||| || |||||||| ||||||||||| || Sbjct 6718 GCCAGCCGTCATCGAGTCCGCCTCATCTAGGATGATTATCTTGTGGCGTCC 6768 >seq7214 Length=40959 Score = 87.8 bits (96), Expect = 3e-11 Identities = 92/118 (78%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTC 724969 ||||||||| || || |||||||||||||| || |||| ||| || |||||| | Sbjct 6963 TATCTACAAAGTCCTGAAGCAGGTGCACCCGGACAC---TGGG--ATC-TCGAACAAGGC 6910 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCC 725027 |||| ||||||||||| |||||||||||||| |||| || || | |||||| ||| Sbjct 6909 TATGTTAATCATGAACTCCTTTGTCAACGACATCTTCGAGCGGATTGCCACCGAAGCC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176295459365830