Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7108 104 2e-17 seq10166 82.4 7e-11 >seq7108 Length=7890 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||||||||| || |||| ||| || | || || || ||||| || ||||| Sbjct 6525 TCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAA 6466 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || ||||| || | || | || |||||||| |||||| ||||| ||| Sbjct 6465 ATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTCA-CGTT 6407 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 | | | |||||| |||||| ||||||| ||||| ||||| |||||||| Sbjct 6406 GTCAATCGTGTCCGACGATTCGACCTCCAGGGTGATGGTTTTCCCCGTCAA 6356 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | ||| ||| ||||| |||||||| ||||| | ||| || |||| ||| Sbjct 5363 ACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCC 5304 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| || || ||||| ||||| ||||||||||||| ||| | | |||||| || Sbjct 5303 AACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCTTGA 5244 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| |||| | | |||||| || || ||||| | || || || || Sbjct 5243 ATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTCTT 5185 Query 35707 ACCCGTCAA 35715 || ||||| Sbjct 5184 GCCGGTCAA 5176 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| || || | ||| || |||| || || ||||| || ||||| Sbjct 5636 TCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAG 5577 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| || ||||||||| ||||| ||||| ||| Sbjct 5576 ATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGTATCTTCGCCTTCA-CGTT 5518 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | | ||||| || || || |||| ||||| || ||||| |||| Sbjct 5517 GTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTTACCAGTCA 5468 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||||||||||||||||| || ||| | || || || ||||| || ||||| Sbjct 5927 TCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAA 5868 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| || || | ||| | || ||| || ||| |||||| ||||| | | Sbjct 5867 ATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTG 5808 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||| |||||| || |||| ||||| || || || || Sbjct 5807 TCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTTGCCGGT 5761 >seq10166 Length=49910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||| || || |||||||| ||||||| |||||| | || || Sbjct 22217 ACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGCCCATCTTCG 22158 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || || || ||||| ||||| || |||||||| | ||| | | || ||||| Sbjct 22157 AGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGA 22098 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | | ||||| || || || |||| ||||||||||| Sbjct 22097 ATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTGATCGTTTTT 22038 Query 35708 CCCGTCAA 35715 || ||||| Sbjct 22037 CCTGTCAA 22030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450705047232200