Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7108 129 6e-25 seq10166 105 7e-18 >seq7108 Length=7890 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || |||||||| || |||||||||||||| | Sbjct 6561 CCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCC 6502 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || || ||||| |||||||||||||| |||||||||||||| Sbjct 6501 AGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGG 6442 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || || || ||| | ||||| |||||||| || Sbjct 6441 ATGCCTTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACC 6382 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAA 134692 || || || |||||||| || || || Sbjct 6381 TCCAGGGTGATGGTTTTCCCCGTCAA 6356 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| ||||| || | ||| || || ||||| || ||||||||||| ||| | Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| || || || |||||||| | |||||| |||||||| || Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || || || ||| | ||||| |||||||| || Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || ||||| Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGT 5761 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || | || || || || || ||||| |||||||||||| | Sbjct 5381 CCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCG 5322 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || | ||||||||||||||| ||||| |||||||| || || || Sbjct 5321 AGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGG 5262 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || || || ||| | ||||||||| || || || Sbjct 5261 ATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACC 5202 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAA 134692 || || ||||| || || ||||| || Sbjct 5201 TCAAGGGTAATAGTCTTGCCGGTCAA 5176 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | |||||||| || || ||||||||||| ||||||||||| Sbjct 5674 TTCCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCG 5615 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | ||| || || || ||||| ||||| || | ||||||||| || || | Sbjct 5614 CAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAG 5555 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || ||| | ||||| || || || | Sbjct 5554 GAATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAA 5495 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | || ||||| ||||| || Sbjct 5494 CTTCCAAGGTGATGGTCTTACCAGT 5470 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 ||||||||||| || || | ||||| ||||| ||||| |||||||| ||||| | | | Sbjct 5087 AGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATG-TACG 5029 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || || ||||| || ||||| ||||| || || ||||| || || || ||||| Sbjct 5028 GCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTC 4969 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||||||||| ||||| ||| | ||||| || || || || || || || Sbjct 4968 CTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGT 4909 Query 134675 AATGGTTTTACCGGT 134689 || || || || || Sbjct 4908 GATAGTCTTGCCCGT 4894 >seq10166 Length=49910 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| ||||| | || | || || ||||| || || || |||||||||||| Sbjct 22237 TTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 22178 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || | || ||||| |||||||| ||||| ||||| || ||||| || || | Sbjct 22177 CCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAG 22118 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || ||||| ||| | ||||| || || || | Sbjct 22117 GGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGA 22058 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | ||| || ||||| || || || Sbjct 22057 CTTCCAAAGTGATCGTTTTTCCTGTCAA 22030 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| |||||||| || ||||| | || || |||||||| ||||||||||| ||| Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 ||| || || || ||||| ||||| || ||||| || || || || || || || || Sbjct 21884 AAC-GTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGG 21826 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || |||||||| || ||| || || | ||||| || ||||| || Sbjct 21825 AATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAAC 21766 Query 134666 GTCGAGAGTAATGGTTTTACCGGT 134689 || | || ||||| || || || Sbjct 21765 TTCCAAGGTGATGGTCTTGCCTGT 21742 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || | || |||||||| |||||||| || || ||||| Sbjct 22527 TTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCG 22468 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || || ||| || || |||||||| ||||| || | ||| ||||| || || | Sbjct 22467 CCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGG 22408 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| || ||||| || || || || | ||||| || || || | Sbjct 22407 GGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAA 22348 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || ||||| || Sbjct 22347 CTTCAAGAGTGATCGTCTTACCAGT 22323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505299120801800