Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6918 91.5 2e-13 >seq6918 Length=27162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 |||| ||||| || | ||||||||| || | || || || ||||| |||||||| || Sbjct 5916 ACTCGAAGCATGGGCACAATACCATTGGAGTAGCCGTTGGTCCCAGAGATATAACTACCA 5975 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || ||||| |||| || || ||||| || || | || ||||| | ||| Sbjct 5976 GTAGCCCGGATATTGTTAATGTGGAGTCCGATTCCACCGGCACTCTTGGAGATCATAGCG 6035 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG-AAGAAA 69965 ||| |||||| |||||||| || || || || ||| | | || || ||||| Sbjct 6036 CAAGTTTTCAAGGTGTCATAAATTCCGTCAATTGAATCTGATTTACTGGCAACCAAGAA- 6094 Query 69966 ACAGCTAGAC---ATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || |||| | ||| |||| |||||| ||||| || | ||| || || ||||| Sbjct 6095 ---GCAAGACGAGAGTTGTGGATGAGGAGTTCCGGCATTGAAAAGTGTCGGTGAGGCGTG 6151 Query 70023 AGTGAA 70028 |||||| Sbjct 6152 AGTGAA 6157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686773865352600