Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6413 150 1e-31 >seq6413 Length=7563 Score = 150 bits (166), Expect = 1e-31 Identities = 320/474 (68%), Gaps = 18/474 (4%) Strand=Plus/Minus Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---C 19418 ||| || || ||| |||||||||||||| || ||| || | ||||| | || | | Sbjct 4113 TGGTCCTCCTGGTACCGGAAAAACATTAATGGCAAGACAAATCGGTAAAATGCTGAACGC 4054 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | ||| || ||||| ||||| || ||||| || || |||| ||| || |||| Sbjct 4053 CAGGGAGCCT---AAGATTGTGAATGGGCCGGAAATTTTGAACAAATTTGTTGGAGAATC 3997 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 ||| | || | ||| |||||||| || || |||| |||| | || | |||| | Sbjct 3996 GGAGAAGAACATCCGAGAATTGTTTGCAGAAGCAGAAGTAGAATATAAG-GCCAAGGGGG 3938 Query 19539 CAAAAGTTCTT---TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 || ||| | ||||| || ||| | || || ||||| || || ||||| || || Sbjct 3937 ATGAA--TCTGGACTACACATCATCATATTTGACGAGTTGGATGCGATTTGTAAACAGAG 3880 Query 19596 AGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 ||| || ||||| | |||||| ||| | || ||||||||||| |||||||| Sbjct 3879 AGGCTCGACCGGTGGTGGGACTGGAGTCGGCGACTCCGTCGTCAATCAACTGCTGTCAAA 3820 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | ||||| || | ||| | || || ||| || | || || ||||| ||| | |||| Sbjct 3819 AATGGACGGAGTCGATCAATTAAACAACATTCTAATCATCGGAATGACGAATCGGTTGGA 3760 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 | || || || || | ||||| ||||| || ||| | | || || || ||| Sbjct 3759 CATGATTGATGAGGCTTTGCTCCGACCAGGTCGATTAGAAGTCCACATGGAGATCTCCTT 3700 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCG 19823 ||||||||| |||||| | ||||| | ||||| ||||| ||| ||||| Sbjct 3699 ACCCGATGAGAATGGACGGTTACAAATTCTCAACATCCATACGGCAAAAATGCG 3646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397379876618575