Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07]
15,715 sequences; 99,534,058 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq7108 123 2e-23
>seq7108
Length=7890
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | ||||| ||||| || | || || ||||| ||||| ||||| ||| |
Sbjct 5963 CCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCC 5904
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| ||||| | |||||||| || || || || ||||||||||||||||||| || ||
Sbjct 5903 AGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGG 5844
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||||||||| ||||||| | |||| | || | ||||| | | ||| |||
Sbjct 5843 ATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACT 5784
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAG 27226
|| ||||| || | ||||| || ||
Sbjct 5783 TCCAGAGTGATGGTCTTGCCGGTGAG 5758
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | || | |||| ||| | ||||| || ||||| ||||||||||| |
Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| ||||| ||||||| || || || |||||| |||||||||| ||||||||||| ||
Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || |||||| | || | | | || | || || | | ||| ||
Sbjct 6142 ATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACC 6083
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGA 27227
|| || || || | ||| || || |||
Sbjct 6082 TCAAGGGTGATTGTTTTACCTGTGAGA 6056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424853013775080
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |