Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1054 86.0 8e-12 >seq1054 Length=9129 Score = 86.0 bits (94), Expect = 8e-12 Identities = 212/317 (67%), Gaps = 10/317 (3%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACAT--CTTGATAATC-CTT 179864 ||| ||||| ||||| || | |||||||| || |||| | |||| || ||| Sbjct 4760 ATCGGTCATGATCATCAGGCTGCCATAGCGGAG---GGAATCCCTACTTGTGTATGTCTT 4816 Query 179865 ACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG 179924 ||||| ||||| |||| ||| | |||| | | | ||| || || ||||| Sbjct 4817 GCCTTGCTGAAGCCCCATGATTTGTTTGATGTGTTGTATTTCTGCATTAGACAGAAGTTG 4876 Query 179925 CGC--CACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAG 179982 ||| |||| ||| || |||||||| || || | ||||||||| || ||||| Sbjct 4877 CGCGCCACT--AGCCTCACGGACATTGAGCAGTTTACCTCTGAGAGGGAATACGCCGTAA 4934 Query 179983 TGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCC 180042 | ||| || || | || ||||||||||| || || | || || || || || || || Sbjct 4935 TTATCGCGTCCTATGACCGAGAGACCAGCCACAGCCAAGGATTTGGCTGAGTCTCCTTCG 4994 Query 180043 GTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAAC 180102 |||| ||| || ||||| | | | | | ||| || || || ||||| || |||| | Sbjct 4995 GTCAAGATCAGTGTACAATCTGCGGCCTTCTTCGTTCCGGCATTATTCGCATCTTCCAGC 5054 Query 180103 TTGGGAATACCAGTAAT 180119 ||| ||| ||||| || Sbjct 5055 TTGACAATCCCAGTGAT 5071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618313716135400