Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10166 170 6e-37 seq11162 152 2e-31 seq7108 147 7e-30 >seq10166 Length=49910 Score = 170 bits (188), Expect = 6e-37 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||||| |||||||| | || ||||| | ||| || || ||||| ||||| ||||||| Sbjct 22533 TTTACATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTAT 22474 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || |||||||||||||| || |||||||| ||||||||||| | Sbjct 22473 AGTCCGCCAGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGT 22414 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || |||||||| |||||||| || || || || ||||| || | ||||| | Sbjct 22413 CCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGG 22354 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||||||||||| || | ||||| || || || Sbjct 22353 ACTCAACTTCAAGAGTGATCGTCTTACCAGTAAG 22320 Score = 152 bits (168), Expect = 2e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || || |||| || || || | ||||||||| |||||||| || || || || || Sbjct 22239 CATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTC 22180 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | |||||||||||||| |||||||| ||||||||||| | |||||||| || || Sbjct 22179 GGCCAGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGG 22120 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| ||||||||||| || ||||| ||||| || ||||| ||||| | ||||| | || Sbjct 22119 AGGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTC 22060 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| | || | || ||||| || Sbjct 22059 GACTTCCAAAGTGATCGTTTTTCCTGT 22033 >seq11162 Length=11478 Score = 152 bits (168), Expect = 2e-31 Identities = 226/319 (71%), Gaps = 1/319 (0%) Strand=Plus/Plus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | || || || || || || || || | ||||| ||||| || ||||| || Sbjct 2676 GTTGTCACCGTCCCCGCTTACTTCAACGACTCTCAGCGACAGGCAACCAAGGATGCCGGT 2735 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || | ||||| || |||| || ||||| || || || || || |||||| Sbjct 2736 CTTATCGCTGGACTCAATGTCCTTCGAATTATCAATGAGCCAACCGCCGCTGCCATTGCA 2795 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || | || || | | | ||| |||| || | || || ||| |||| || Sbjct 2796 TACGGTTTGGACAAGAAGGCTACGGGAGAGCGAAATGTTTTGATCTTCGATCTAGGAGGA 2855 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||||||||| || || || || |||||||||| || |||||||| || || ||| Sbjct 2856 GGCACTTTTGATGTCTCCCTTCTTACTATTGAAGAGGGCATCTTTGAAGTCAAGGCGACT 2915 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||||| Sbjct 2916 GCCGGTGACACCCATCTTGGTGGTGAAGACTTTGACAATCGTCTCGTCAACCACTTTGTT 2975 Query 349913 AAAGAATTTAAGCGTCAAG 349931 ||||| || || |||| Sbjct 2976 GCGGAATTCAAACG-CAAG 2993 Score = 111 bits (122), Expect = 5e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 349192 AAAAACCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAA 349251 || ||| ||| | || || || | || || || || || || || | ||| |||||||| Sbjct 2090 AATAACAGCTGTCGGTATTGACCTTGGCACCACCTACTCATGCGTGGGTGTATGGCAAAA 2149 Query 349252 TGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGC 349311 ||| || || ||||| ||| | ||||||||||| ||| | || || || |||||||| || Sbjct 2150 TGACCGGGTTGAAATCATTTCCAATGATCAAGGAAACCGCACCACTCCCTCATACGTGGC 2209 Query 349312 ATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCC 349371 |||| || | |||||| |||| |||||| | || || || |||| || || || Sbjct 2210 TTTTAATGACTCCGAGCGTCTGATCGGTGATGCCGCGAAGAACCAAGTCGCCATGAACCC 2269 Query 349372 AAAAAATACGGTTTTTGATGCTAAGCGACTTATTGG 349407 | | || || ||||| || ||||| || ||||| Sbjct 2270 CCACCACACTGTCTTTGACGCCAAGCGTCTGATTGG 2305 >seq7108 Length=7890 Score = 147 bits (162), Expect = 7e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | | || || |||||||| |||||||| ||||| ||||| | Sbjct 6270 TTTGCATTCCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGT 6211 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| || || ||||| ||||||||||| || || || || || |||||||| |||| Sbjct 6210 AGTCAGCCAAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGAT 6151 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| ||||| || || ||||| || | || || || ||||| | ||| |||| Sbjct 6150 CCGGAGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATG 6091 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| || ||||| || | ||| || || || || Sbjct 6090 ATTCGACCTCAAGGGTGATTGTTTTACCTGTGAG 6057 Score = 140 bits (154), Expect = 1e-27 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || | || ||||| | || ||||| || |||||||| | Sbjct 5104 TTTGCATACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGT 5045 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| ||||| || || ||||| ||||||||||| |||||||| | ||||| |||| Sbjct 5044 AGTCAGCCAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGAT 4985 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || |||||||| || || ||||| ||||| | || || | Sbjct 4984 CCGGTGGGATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAG 4925 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||||| || || ||| Sbjct 4924 ACTCGACCTCCAGGGTGATAGTCTTGCCCGTGAGT 4890 Score = 134 bits (148), Expect = 4e-26 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || || || || ||||| ||||| || ||||| | | || ||||||||| Sbjct 5947 AGACCAAG-TGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCT 5889 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || ||||| ||||||||||| || ||||| || ||||| ||||| || || ||||||||| Sbjct 5888 TCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCC 5829 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||| ||||| | || || | ||| ||||| || || | ||| Sbjct 5828 TGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTC 5769 Query 140706 TTTCCGGTTAG 140716 || ||||| || Sbjct 5768 TTGCCGGTGAG 5758 Score = 125 bits (138), Expect = 2e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | | ||||| || || || ||||| || ||||| || || | Sbjct 5680 TTTGCATTCCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGT 5621 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || ||||||||||| || ||||||||||| ||||| ||||| | Sbjct 5620 AGTCCGCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGT 5561 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || ||||| || || || || || || || || | || || | Sbjct 5560 CAGGAGGAATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGG 5501 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||||||| | || | ||||| || || || Sbjct 5500 ACTCAACTTCCAAGGTGATGGTCTTACCAGTCAG 5467 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || | ||| || |||||||||||||| || || || || Sbjct 5385 CATACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTC 5326 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || ||||| | ||||| || |||||||| | || ||||| || || Sbjct 5325 GGCGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGG 5266 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||| ||||| || || || || || || || | || || | || Sbjct 5265 AGGGATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTC 5206 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| ||||| |||| ||||| ||||| Sbjct 5205 AACCTCAAGGGTAATAGTCTTGCCGGT 5179 Score = 104 bits (114), Expect = 7e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| || ||||| ||||| || || || | | || || |||||||||| Sbjct 6541 CAAG-TGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGTACGGCCATCTTCAA 6483 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||| || || ||||| || | |||||||||||| || || || ||||| || || || | Sbjct 6482 GTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCCTTCCTTGTCTTGGA 6423 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGT 140698 | || | || || || ||||||| || || | ||| || || || || Sbjct 6422 TCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACCTCCAGGGT 6374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514949305894145