Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10166 152 6e-32 seq7108 149 7e-31 >seq10166 Length=49910 Score = 152 bits (168), Expect = 6e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || |||||||| |||||||| ||| | ||| | || ||||| Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAG 22379 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||||||||| || || || || || |||||||| ||||| || ||||| || Sbjct 22380 GCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGC 22439 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || || | ||| || || || ||||||||| |||||||||| ||||| || Sbjct 22440 AAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTC 22499 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| | || | || || || |||||| Sbjct 22500 CATTTGGTTCTTCGACTCCGTGGTGGA 22526 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || | || ||||| || || | || | || | || Sbjct 21739 CTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAAA 21798 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||| ||||||||||| |||||||||||||| || || |||| ||||| ||| Sbjct 21799 GCCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGGT 21858 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||||||||||| |||||| | || ||||| || |||||||||| || || | Sbjct 21859 AAACAACTCGAGGATGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCTTG 21918 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| ||||| ||||| Sbjct 21919 CACCTGGTCTTGCGACTTCGAGGTGG 21944 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || ||| | || || ||||| ||| | |||| ||| | |||||| Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGCT 22092 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||| || ||||| |||||||||||||| || | || |||||||| || Sbjct 22093 AAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAAA 22152 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| || || || || ||||| || |||| || || |||||||||||| Sbjct 22153 CAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCAT 22212 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||| | || || || || ||| Sbjct 22213 TTGGTCCTCCGACTACGAGGGGGA 22236 >seq7108 Length=7890 Score = 149 bits (164), Expect = 7e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || | || |||||||| || | ||| | || ||||| Sbjct 5467 CTGACTGGTAAGACCATCACCTTGGAAGTTGAGTCCTCGGACACCATCGACAACGTGAAG 5526 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||||||||| || |||||||| |||||||||||||| || |||||||| Sbjct 5527 GCGAAGATACAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTTATCTTTGCTGGC 5586 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||||||| || || | |||||||| || ||||| || ||||||||||||| || || Sbjct 5587 AAGCAACTTGAAGACGGCCGTACCCTTGCGGACTACAACATCCAAAAGGAATCTACCCTC 5646 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || | ||||| || || ||| Sbjct 5647 CACCTCGTTCTCCGTCTCCGTGGAGGA 5673 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || ||||| || || || || || | ||||| ||| ||||| Sbjct 5758 CTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAG 5817 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || ||||| || ||||| || ||||| || || |||||||| ||||||||||| Sbjct 5818 ACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGA 5877 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||||||||| |||| || || || || || || || | || || ||||| || || Sbjct 5878 AAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTC 5937 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||||||||| ||||| || Sbjct 5938 CACTTGGTCTTGCGTCTCCGCGGAGG 5963 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||||||||| |||||||||||||| || | || | || ||||||| Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAGGCC 5238 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| || |||||||| || ||||| ||||||||||| | || ||||| || || Sbjct 5239 AAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAAA 5298 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || || | || ||||| || ||||| || ||||||| || || || || ||| Sbjct 5299 CAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCAT 5358 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | ||||| || || || Sbjct 5359 TTGGTCCTTCGTCTCCGAGGCGG 5381 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || ||||||||||| || || ||||| ||||| || | ||||| ||| | ||| Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||| |||||||| || || || || || || || || | || ||||| || Sbjct 4951 GCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGA 5010 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || || | ||||| | || ||||| ||| | || ||||| ||||| | Sbjct 5011 AAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTG 5070 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| ||||| ||||| Sbjct 5071 CATCTGGTGTTGCGACTTCGTGGTGG 5096 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 27426 GCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 |||| || || || || || || || ||||| || || || | |||| || ||| Sbjct 6354 GCTTGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGA 6413 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 || | || || || |||||||| || || || || || ||||| ||| | |||||||| | Sbjct 6414 AGACCAAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCG 6473 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | |||||||| || |||| |||||||| || ||||| || | || || |||||||||| Sbjct 6474 GCAAGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTC 6533 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | || | |||||||| || || Sbjct 6534 TTCACTTGGTACTCCGTCTTCGTGGAGG 6561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570198369650800