Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10166 98.7 6e-16 seq7108 98.7 6e-16 >seq10166 Length=49910 Score = 98.7 bits (108), Expect = 6e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| ||| ||||||||| || ||||| || | || ||||| |||||||| Sbjct 22507 ACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCGACCGTCTTCA 22448 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || ||||| || | ||| || |||||||| || | || || ||||| || Sbjct 22447 AGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTCTTTGTC-CTG 22389 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | || | || ||| || || ||||| | ||| ||||| | || ||||| || Sbjct 22388 AATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGTGATCGTCTT 22329 Query 34677 ACCGGT 34682 ||| || Sbjct 22328 ACCAGT 22323 Score = 95.1 bits (104), Expect = 8e-15 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| ||||| |||| || | || ||||||||| ||||| || || | Sbjct 21944 CCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCC 21885 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || ||||||||||||||||| ||||| || |||||||| || || Sbjct 21884 AACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGA 21825 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | |||||||||||| ||| || | ||||||| || Sbjct 21824 ATGCCCTCCTTGTCT-TGAATCTTGGCTTTAACGTTA 21789 >seq7108 Length=7890 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | ||||| || |||||| || || |||||||| || || | Sbjct 6563 CGCCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCG 6504 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | ||||||||||| || |||||||| || ||||| || || || |||| Sbjct 6503 CCAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCG 6444 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTC 34655 | | || ||||||||| |||| || || || ||| | ||| |||| | || | || Sbjct 6443 GGATGCCTTCCTTGTCTTGGATC-TTGGTCTTCACGTTGTCAATCGTGTCCGACGAT-TC 6386 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAA 34685 || |||| ||| || ||||| || || || Sbjct 6385 GACCTCCAGGGTGATGGTTTTCCCCGTCAA 6356 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || |||| ||| || | |||| ||| || || ||||||||| || || || || | Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| ||| ||||||||||||| || ||||| || || | ||| ||||| ||||| | Sbjct 6202 AAAGTG--CGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAG 6145 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | || ||||||||| ||||| Sbjct 6144 GAATGCCTTCCTTGTCTTGAATCTT 6120 Score = 84.2 bits (92), Expect = 1e-11 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| ||||| || || | ||| || || ||||||||||||| || || ||||| Sbjct 5636 TCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAG 5577 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGA 34634 || | |||||| ||||| || || | || ||||||| |||| ||| || | || ||| Sbjct 5576 ATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGT-ATC-TTCGCCTTCACGT 5519 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||||| | ||| ||||||| ||| || || ||||| || Sbjct 5518 TGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTTACCAGT 5470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314669320921595