Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7108 129 5e-25 seq10166 122 8e-23 >seq7108 Length=7890 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| |||| || || || || || | || ||| | ||||| | ||||| Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 |||||||||||||| ||||| || ||||| |||||||| || || || | ||||| Sbjct 4951 GCGAAAATTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGA 5010 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||||| |||||||| | || | | || ||||| ||||| |||||||| ||||| Sbjct 5011 AAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTG 5070 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| ||||| | || ||||| || Sbjct 5071 CATCTGGTGTTGCGACTTCGTGGTGGTAT 5099 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| ||||||| ||||| || || | |||||| | || || | || || Sbjct 5177 TGACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAGG 5236 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || |||||||| || || || || || || || || ||||| || || | || |||| Sbjct 5237 CCAAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCA 5296 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 |||| ||||||||| | ||| | |||| |||||||| ||||| ||||| || | | Sbjct 5297 AACAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGC 5356 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| | ||| | || || || || Sbjct 5357 ATTTGGTCCTTCGTCTCCGAGGCGGTAT 5384 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||||||| | || ||||| ||||| ||| |||| ||| | ||||| | || || Sbjct 5758 CTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAAG 5817 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || || ||||| ||||| || ||||||||||||||| | || | || || Sbjct 5818 ACCAAGATCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTGGA 5877 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | ||||| | || | |||||||||||||||| || || || || | Sbjct 5878 AAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACACTC 5937 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| |||||| | || || || || Sbjct 5938 CACTTGGTCTTGCGTCTCCGCGGAGGGAT 5966 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| || || || | || || ||||| || ||| | || || | ||||| | ||||| Sbjct 6056 TCTCACAGGTAAAACAATCACCCTTGAGGTCGAATCATCGGATACCATTGACAACGTCAA 6115 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 || ||||||||||| |||||||| || || |||||||| ||| | || | |||||| Sbjct 6116 GACCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAACAACGTCTCATTTTCGCCGG 6175 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 ||| ||| | |||||| | || | | || ||||| || ||||||||||| ||| | Sbjct 6176 CAAGCAACTTGAAGACGGGCGCACTTTGGCTGACTACAATATCCAAAAGGAGTCTACCCT 6235 Query 27188 ACATTTGGT 27196 ||| |||| Sbjct 6236 TCATCTGGT 6244 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || || | || || || || || ||| |||| ||| ||||||| | || || Sbjct 6357 TGACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGA 6416 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || |||||||| |||||||| || |||||||| || ||||| || | ||||||| Sbjct 6417 CCAAGATCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGCA 6476 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | ||||| | ||| | | || ||||||||||| || || || || | | Sbjct 6477 AGCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCACTCTTC 6536 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCATA 27218 | ||||| | ||| | || || ||| || Sbjct 6537 ACTTGGTACTCCGTCTTCGTGGAGGCGTA 6565 >seq10166 Length=49910 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| || |||||| | || || | ||||| ||| | || ||| |||| || | || || Sbjct 21738 TCTCACAGGCAAGACCATCACCTTGGAAGTTGAATCTTCGGACACGATCGATAACGTTAA 21797 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 | || ||||||||||| || ||||| || || || ||||| || ||||| | ||||| Sbjct 21798 AGCCAAGATTCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGCTTAATCTTTGCCGG 21857 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCT 27186 |||||| | || || | ||| |||| |||| |||||||| ||||||||||| |||| Sbjct 21858 TAAACAACTCGAGGA-TGGTCGTACGTTGGCCGACTACAACATCCAAAAGGAGTCTACCT 21916 Query 27187 TACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || |||| ||||| | || ||||| || Sbjct 21917 TGCACCTGGTCTTGCGACTTCGAGGTGGTAT 21947 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || ||||||||||| || | || ||| | || || | || || Sbjct 22320 CTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAAG 22379 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||| |||||||||||||| || || || || || ||| | || | || ||| Sbjct 22380 GCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGGC 22439 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||||| | |||||| || || | | || || || || ||||||||||| || | Sbjct 22440 AAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCTC 22499 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| | || | || ||||| || Sbjct 22500 CATTTGGTTCTTCGACTCCGTGGTGGAAT 22528 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || || | || ||| | ||||| || | || ||| | ||||| | ||||| Sbjct 22031 TGACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGG 22090 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||||||||||||||| || || || || || || || || || | || |||| Sbjct 22091 CTAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCA 22150 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 ||||| | ||||| | || | |||| |||||||| || || ||||| || | | Sbjct 22151 AACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTC 22210 Query 27190 ATTTGGT 27196 ||||||| Sbjct 22211 ATTTGGT 22217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434832965716800