Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7108 93.3 3e-14 >seq7108 Length=7890 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || ||| || |||||||| || ||||||||||||||| |||| Sbjct 4963 GACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGGAAAACAACTGGAA 5022 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | ||| | || ||||| || || || ||| ||| |||||| |||| ||| Sbjct 5023 GACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTTGCATCTGGTGTTG 5082 Query 28003 CGTTTGCGTGGCGG 28016 || | ||||| || Sbjct 5083 CGACTTCGTGGTGG 5096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || || || ||||| || ||||| ||||| |||| |||| | | |||| Sbjct 5268 GGACCAGCAGCGATTGATCTTTGCAGGCAAACAGTTGGAAGACGGCCGCACCCTCGCCGA 5327 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||||| || |||||||||| | ||| | || ||||| Sbjct 5328 CTACAACATCCAAAAAGAGTCTACACTGCATTTGGTCCTTCGTCTCCGAGGCGG 5381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355794242897805