Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7108 165 2e-35 seq10166 156 1e-32 >seq7108 Length=7890 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| || || || || ||||||||||| || |||||||| Sbjct 5670 TCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAG 5611 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||| || |||||||| || |||||||| || || ||||||||||||| Sbjct 5610 GGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAAT 5551 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| |||||||| ||||||||||| ||| ||||| || Sbjct 5550 GCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTC 5491 Query 211070 GAGAGTGATCGTCTTTCCCGTGAG 211093 | ||||| ||||| || || || Sbjct 5490 CAAGGTGATGGTCTTACCAGTCAG 5467 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||||||||| ||||| || ||||| || ||||| || Sbjct 6559 TCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAG 6500 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||| || |||||||| || || || | ||||| || || || || | Sbjct 6499 GGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGAT 6440 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| |||||||| |||||||| || || ||||| || ||| ||||| Sbjct 6439 GCCTTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACCTC 6380 Query 211070 GAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || ||||| Sbjct 6379 CAGGGTGATGGTTTTCCCCGT 6359 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| || ||||| || ||||| |||||||| || || || || | || Sbjct 6256 CGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTG 6197 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| || |||||||| ||||| || || |||||||| || ||||||| ||| Sbjct 6196 CGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCT 6137 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| || ||||| || ||||| || || ||| ||||| || Sbjct 6136 TCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACCTCAAGG 6077 Query 211074 GTGATCGTCTTTCCCGTGAGA 211094 ||||| || || || |||||| Sbjct 6076 GTGATTGTTTTACCTGTGAGA 6056 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || ||||||||||||||||| || || || ||||| | || ||| Sbjct 5366 AGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCT 5307 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| |||||||| ||||| | || || ||||| ||||| | || ||||| || Sbjct 5306 TCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCT 5247 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| ||||| ||| |||||||| || || || ||| Sbjct 5246 TGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTC 5187 Query 211083 TTTCCCGT 211090 || || || Sbjct 5186 TTGCCGGT 5179 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| || || || ||||| || ||||| ||||| || || || | |||||||| Sbjct 5946 GACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTC 5887 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || || || || || || ||||| || ||||| | || || || ||||| Sbjct 5886 GAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTG 5827 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| ||||| || || |||||||| || ||| || || |||||||| ||||| Sbjct 5826 GATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTT 5767 Query 211085 TCCCGTGAG 211093 || ||||| Sbjct 5766 GCCGGTGAG 5758 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | || || || | |||||||| || || || || || || || | || Sbjct 5091 ACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGT 5032 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||| || || || || ||||| | |||||||| || || || | || Sbjct 5031 ACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACC 4972 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || || || || || |||||||| || || ||||| || Sbjct 4971 TTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAG 4912 Query 211073 AGTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| |||||||| Sbjct 4911 GGTGATAGTCTTGCCCGTGAG 4891 >seq10166 Length=49910 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | || || |||||||| |||||||| ||||| ||||| || || Sbjct 22520 ACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGT 22461 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || || ||||| || ||||| || ||||| ||||| || || | || Sbjct 22460 TCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCC 22401 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||| ||||| |||||||| ||||||||||||||| ||||| || || Sbjct 22400 TTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAG 22341 Query 211073 AGTGATCGTCTTTCCCGTGAG 211093 |||||||||||| || || || Sbjct 22340 AGTGATCGTCTTACCAGTAAG 22320 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | ||||||||||||||||| |||||||| || || || || || Sbjct 22229 CGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTT 22170 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || || ||||| || ||||| | ||||| ||||| ||||| | |||| Sbjct 22169 CGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCT 22110 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || ||||| || || || || || ||||||||| || || || | | Sbjct 22109 TCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAA 22050 Query 211074 GTGATCGTCTTTCCCGT 211090 |||||||| ||||| || Sbjct 22049 GTGATCGTTTTTCCTGT 22033 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | ||| ||||| | || ||||| ||||||||||| || || || | || Sbjct 21938 CGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTA 21879 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || || || || || || ||||| | |||||||||||| ||||||| || Sbjct 21878 CGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCCC 21819 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| ||| ||||| ||||| ||||| || |||||| || | Sbjct 21818 TCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAAG 21759 Query 211074 GTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || |||||| Sbjct 21758 GTGATGGTCTTGCCTGTGAGA 21738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158918606555975