Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10166 125 5e-24 seq7108 118 7e-22 >seq10166 Length=49910 Score = 125 bits (138), Expect = 5e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || ||||||||||||||| | ||||| || ||| | |||||| |||| ||| | || | Sbjct 22033 ACAGGAAAAACGATCACTTTGGAAGTCGAGTCCTCTGACACTATTGACAATGTCAAGGC- 22091 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || ||| ||||||||||| | || ||||| || || || || || ||||| ||||| Sbjct 22092 TAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAGCAACGATTGATCTTTGCTGGCAA 22151 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| ||||| | || ||| | | ||| |||||||| || ||||||||||| | || Sbjct 22152 ACAACTCGAAGATGGGCGAACTCTGGCCGACTACAACATCCAGAAAGAGTCCACTCTTCA 22211 Query 23814 TTTAGT 23819 ||| || Sbjct 22212 TTTGGT 22217 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 ||| || || || ||||||||||| |||||||| ||| | ||||| | || | | || Sbjct 22319 CCTTACTGGTAAGACGATCACTCTTGAAGTTGAGTCCTCTGACACCATCGATAACGTGAA 22378 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 || ||| ||||||||||| | || || || || || ||| | || ||||| || Sbjct 22379 GGCCAAGATTCAGGACAAAGAAGGCATCCCCCCGGACCAGCAACGTCTCATCTTTGCGGG 22438 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 ||||||||| ||||||| || ||| | | || || || || ||||| |||||||| | Sbjct 22439 CAAACAACTTGAAGACGGTCGAACTCTGGCGGACTATAATATCCAAAAGGAGTCCACGCT 22498 Query 23811 ACATTTAGTT 23820 ||||| ||| Sbjct 22499 CCATTTGGTT 22508 >seq7108 Length=7890 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690 |||||||| || || ||||| || || || || || ||||||| |||| ||| | || Sbjct 4891 CTCACGGGCAAGACTATCACCCTGGAGGTCGAGTCTTCGGACACCATTGACAATGTCAAG 4950 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | |||| || ||||| |||||| | || || |||||||| || || || |||||||| Sbjct 4951 GCGAAAA-TTCAAGACAAGGAAGGTATCCCACCGGATCAACAACGGTTGATCTTTGCCGG 5009 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||||||||||||| || || || | || ||||| || || || |||||||| || Sbjct 5010 AAAACAACTGGAAGACGGCCGTACATTGGCTGACTACAATATTCAGAAGGAGTCCACCTT 5069 Query 23811 ACATTTAGTTTT 23822 ||| | || || Sbjct 5070 GCATCTGGTGTT 5081 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || || || |||||||| ||||| || || ||||||| |||| ||| | || Sbjct 5757 CCTCACCGGCAAGACCATCACTCTGGAAGTAGAATCGTCGGACACCATTGACAATGTGAA 5816 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 || || | | || ||||| || | || || |||||||||||| | || ||||| | Sbjct 5817 GACCAAGA-TCCAGGATAAAGAGGGCATCCCTCCCGATCAACAGCGTCTCATTTTTGCTG 5875 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 | || ||||| ||||| | |||||| | | |||||||||||| || ||||| || ||| Sbjct 5876 GAAAGCAACTCGAAGATGGGCGCACTCTGGCCGATTACAACATTCAGAAAGAATCAACAC 5935 Query 23810 TACATTTAGTTTT 23822 | || || || || Sbjct 5936 TCCACTTGGTCTT 5948 Score = 95.1 bits (104), Expect = 8e-15 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 ||||| ||||| ||||| || || || || || ||||||| |||| || | || || Sbjct 6359 ACGGGGAAAACCATCACCCTGGAGGTCGAATCGTCGGACACGATTGACAACGTGAAGACC 6418 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || | | ||||| ||||| | ||||| ||||| || ||||| || ||||||||||| Sbjct 6419 AAGA-TCCAAGACAAGGAAGGCATCCCGCCCGATCAGCAACGTTTGATTTTTGCCGGCAA 6477 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||| ||||| | || || | | || |||||||| || ||||| ||||| Sbjct 6478 GCAACTTGAAGATGGCCGTACCCTGGCGGACTACAACATTCAGAAAGAATCCAC 6531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || || || || || ||||| ||| | ||||| | || | | || Sbjct 5179 ACCGGCAAGACTATTACCCTTGAGGTTGAGTCCTCCGACACAATCGACAACGTGAAGGCC 5238 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| || || || || | || || || || ||||| || || ||||| |||||| Sbjct 5239 AAGATTCAAGATAAGGAGGGGATCCCTCCGGACCAGCAGCGATTGATCTTTGCAGGCAAA 5298 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 || ||||||||| ||||| | | ||| |||||||| ||||||||||| ||| | ||| Sbjct 5299 CAGTTGGAAGACGGCCGCACCCTCGCCGACTACAACATCCAAAAAGAGTCTACACTGCAT 5358 Query 23815 TTAGT 23819 || || Sbjct 5359 TTGGT 5363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337944862183220