Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7108 140 8e-28 seq10166 134 3e-26 >seq7108 Length=7890 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || ||||| ||||||| ||||| || || | || | || ||| Sbjct 5657 AGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCT 5598 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| |||||||| || || ||||| || ||||| ||||||||||| Sbjct 5597 TCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 5538 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||||||||| |||| || || || || ||||| ||| Sbjct 5537 TGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTC 5478 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 5477 TTACCAGTCA 5468 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | |||||| || |||||||| || | ||||||||||||| ||| Sbjct 5957 CGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTG 5898 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| || ||||| ||||| || || || || ||||| ||||| || || || Sbjct 5897 CGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCC 5838 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || |||||||| ||||||| || |||||||| || | ||| || || | Sbjct 5837 TCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGA 5778 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 5777 GTGATGGTCTTGCCGGT 5761 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||||||||| || | ||||| || |||| || Sbjct 6556 ACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGGGT 6497 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || || || | ||||| || |||||||| || || Sbjct 6496 ACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGGATGCC 6437 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| |||||| || || ||||| || | ||| || || | Sbjct 6436 TTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACCTCCAG 6377 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 ||||| || || |||||||| Sbjct 6376 GGTGATGGTTTTCCCCGTCAA 6356 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| || || || || || || ||||||| |||||| || |||||||| Sbjct 6256 CGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCCAAAGTG 6197 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| || ||||| || ||||| || || |||||||| || || ||||| ||| Sbjct 6196 CGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGAATGCCT 6137 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| || || ||||| || || | ||| || || | Sbjct 6136 TCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACCTCAAGG 6077 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| || || || || Sbjct 6076 GTGATTGTTTTACCTGT 6060 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || || || | ||||| || || || | |||||| || ||||| || Sbjct 5091 ACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGT 5032 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || || ||||| | |||||||| || || || ||||| Sbjct 5031 ACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACC 4972 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || || ||| ||| || |||||||| || | || || || | Sbjct 4971 TTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAG 4912 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||||||||| Sbjct 4911 GGTGATAGTCTTGCCCGT 4894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || ||||||||||| || || || || ||||||||||||||||| ||| ||| Sbjct 4630 ATCAGACGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTGACATTA 4571 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| ||||| |||| || || || || ||||| |||||||| || Sbjct 4570 TCGATAGTGTCGGAGGACTCGACTTCCAAAGTGATGGTCTTGCCGGT 4524 >seq10166 Length=49910 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || ||| ||||| | || || || ||||||| ||||| |||||||| || Sbjct 21938 CGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTA 21879 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || || || || ||||| | ||||||||||| || ||||| || Sbjct 21878 CGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGGAATGCCC 21819 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||| || |||| | | | ||||| ||||| || | ||| || || || Sbjct 21818 TCCTTGTCTTGAATC-TTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAA 21760 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 21759 GGTGATGGTCTTGCCTGT 21742 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | ||||| ||||| || ||||||| ||| || || |||| ||| Sbjct 22520 ACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGT 22461 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| || || || || || ||||| || ||||| ||||| || || || || Sbjct 22460 TCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCC 22401 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| |||||| ||||||||||| |||| || || || | Sbjct 22400 TTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAG 22341 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 22340 AGTGATCGTCTTACCAGT 22323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192291085706210