Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6918 105 9e-18 >seq6918 Length=27162 Score = 105 bits (116), Expect = 9e-18 Identities = 401/617 (65%), Gaps = 22/617 (4%) Strand=Plus/Plus Query 77168 GGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCAT 77227 ||| || ||||| | | |||||| || | |||||| || |||||||| ||||| Sbjct 4707 GGTGTACGGTTCAAAGCACTCATTGAAGCCGAGGATTTGACTCGTCGAAGCAGTGGGCAT 4766 Query 77228 AGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCT-GATTTTATCTTTTAGATATT 77286 ||| || | ||| | || |||| |||| ||| ||| || ||| ||||| | | Sbjct 4767 AGGGGCGAGCAACAGGGAGTTCCTGATACCA-GTGGTCTTGACTTTTTCTTTCAAGCTGT 4825 Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346 ||| ||||| | ||||||||| ||| | ||| | ||| |||| ||||| || | || Sbjct 4826 CCCACTCCCACAAATCTGAAGGCTTAACGTTCCACATGTCGAATTGGAGAATACCCTGAC 4885 Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTC--TGTTT--CAGCTAGTTCACAA 77402 | || ||| || | || || ||||| || || || | || || ||| Sbjct 4886 TCGCGGGTGAACCGGGGAAGGTCTCGTAAGGGCCCTCCTTGATGGCCAACTCGTTTGAG- 4944 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGC 77461 ||||| || || ||| ||| | ||||| || || | | ||||| | |||| || Sbjct 4945 ---GCTTCTAACGCGGCGTGATAGAGAGTTTCAAAGATTTGGGTGTTGAGTTTCTTG-GC 5000 Query 77462 TTCAATACTATCAAACGGATAATGTAAAAGAAT--AAAGGCATCTGCTAATCCCTGAACT 77519 || || || || | | | || | ||||||||| |||||||| || ||| Sbjct 5001 GGCAGCTGATTCGAATGGC--AGCTTGAGGATTTGAAAGGCATCAGCTAATCCTTGTACT 5058 Query 77520 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAA 77579 || |||||||| || | || ||| | || || | ||||| || || | ||||| || Sbjct 5059 CCGATACCAATCGGGCGGTGCCTCATGTTTGACTTCTTAGCCTCCGGTACCGGATAGTAG 5118 Query 77580 TTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTA 77639 || || || || ||| |||| ||||| | || | || || || | |||||| Sbjct 5119 TTGATATCGATTATTCTATTCAGATTCCAGGTGACCTCCTTGGTGACTTCATGTAGTTTT 5178 Query 77640 AGAAAATCAAATCTTCCATCTATAACAA-ACATGTT--CAAAGCTATAGATGCTAGATTA 77696 |||| || || | ||||| ||||| | | ||| ||| || || |||||||||||| Sbjct 5179 TGAAAGTCGTATTTGCCATC---AACAATATAAGTTGGCAAGGCAATTGATGCTAGATTA 5235 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 || || || || || | | | | ||||| || |||||||| || || || || Sbjct 5236 CAGACGGCAACTTCGTCGGGGGCAGAATATTCGATAATCTCGGTGCAAAGGTTGGAGGAT 5295 Query 77757 TTGATAGTGCCCAGATT 77773 ||||| || || || || Sbjct 5296 TTGATGGTTCCAAGGTT 5312 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 || |||||| ||| |||||||| || ||||| || ||| || |||||||| | || Sbjct 5659 CTCAACTCGAGACATGAAGAGATCGGGGATCCAAAGCGCATAGAAAAGATCTCGAGCTCG 5718 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 | ||| || || || ||||||| | || || | | || | || ||| | ||||| Sbjct 5719 ACTTTCCTCCTTCCCGTGATTCTTTCTTAGGTCCAACCAGTCAAAAACATCCGCGTGCCA 5778 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATC 78177 ||| || || || ||||| | | ||||||| ||||||||||| ||||| | ||||| Sbjct 5779 TGGCTCAAGGTAGATTGCAAAGGCACCAGGTCTCTTATTACCTCCTTGATCAACATATC 5837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694532340997600