Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6918 96.9 5e-15 >seq6918 Length=27162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 394/611 (64%), Gaps = 10/611 (2%) Strand=Plus/Plus Query 75763 GGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCAT 75822 ||| || ||||| | | |||||| || | |||||| || |||||||| ||||| Sbjct 4707 GGTGTACGGTTCAAAGCACTCATTGAAGCCGAGGATTTGACTCGTCGAAGCAGTGGGCAT 4766 Query 75823 AGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCT-GATTTTATCTTTTAGATATT 75881 ||| || | ||| | || |||| |||| ||| ||| || ||| ||||| | | Sbjct 4767 AGGGGCGAGCAACAGGGAGTTCCTGATACCA-GTGGTCTTGACTTTTTCTTTCAAGCTGT 4825 Query 75882 TCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||| ||||| | |||||| || ||| | ||| | ||| |||| ||||| || | | Sbjct 4826 CCCACTCCCACAAATCTGAAGGCTTAACGTTCCACATGTCGAATTGGAGAATACCCTGAC 4885 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | || ||| || | || ||||||| || ||||| || | ||| | Sbjct 4886 TCGCGGGTGAACCGGGGAAGGTCTCGTAAGGGCCCTCCTTGATGGCCAACTCGTTTGAGG 4945 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCA 76060 | |||||||| ||| ||| | ||||| || || | | || || | |||| || || Sbjct 4946 CTTCTAACGCGGCGTGATAGAGAGTTTCAAAGATTTGGGTGTTGAGTTTCTTG-GCGGCA 5004 Query 76061 AGACTATCAAAAGGATAATGTAAAAGAAT--AAATGCATCTGCTAGTCCCTGAACTCCAA 76118 || || || | | | || | ||| ||||| |||| ||| || ||||| | Sbjct 5005 GCTGATTCGAATGGC--AGCTTGAGGATTTGAAAGGCATCAGCTAATCCTTGTACTCCGA 5062 Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||| || | || ||| | || || | | ||| || || | || || || || | Sbjct 5063 TACCAATCGGGCGGTGCCTCATGTTTGACTTCTTAGCCTCCGGTACCGGATAGTAGTTGA 5122 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 |||| || ||| |||| ||||| | | || | || || || | |||||| ||| Sbjct 5123 TATCGATTATTCTATTCAGATTCCAGGTGACCTCCTTGGTGACTTCATGTAGTTTTTGAA 5182 Query 76239 AATCAAATTTTCCATCTATCACA-AACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 | || |||| ||||| | | | || | ||| || || |||||||||||||| ||| Sbjct 5183 AGTCGTATTTGCCATCAACAATATAAGTTGGCAAG-GCAATTGATGCTAGATTACAGACG 5241 Query 76298 GCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATA 76357 || || || | | | ||||| || ||||| ||||| || || | ||||| Sbjct 5242 GCAACTTCGTCGGGGGCAGAATATTCGATAATCTCGGTGCAAAGGTTGGAGGATTTGATG 5301 Query 76358 GTTCCAAGATT 76368 |||||||| || Sbjct 5302 GTTCCAAGGTT 5312 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| |||||||| || ||||| || ||| || |||||||| | || || ||| || || Sbjct 5671 CATGAAGAGATCGGGGATCCAAAGCGCATAGAAAAGATCTCGAGCTCGACTTTCCTCCTT 5730 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 || ||||||| | || || | | || | || ||| | |||||||| || || || Sbjct 5731 CCCGTGATTCTTTCTTAGGTCCAACCAGTCAAAAACATCCGCGTGCCATGGCTCAAGGTA 5790 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATC 76772 || || | |||| |||| ||||||||||| ||||| | ||||| Sbjct 5791 GATTGCAAAGGCACCAGGTCTCTTATTACCTCCTTGATCAACATATC 5837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712794352948800