Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10166 129 1e-24 seq7108 105 2e-17 >seq10166 Length=49910 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||| | ||||||||| |||||||| ||||||||||| ||||| | ||||| | Sbjct 22226 AGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCCAGAGTTCGC 22167 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | | |||||||| | | ||||||||| Sbjct 22166 CCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGGATTCCTTCT 22107 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || |||||| | || | |||| || ||| ||||| | ||| Sbjct 22106 TTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACTTCCAAAGTG 22047 Query 152067 ATAGTTTTGCCCGT 152080 || ||||| || || Sbjct 22046 ATCGTTTTTCCTGT 22033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| | ||| || || | |||||||| |||||||||||||| ||||| || || | Sbjct 21935 AGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGA 21876 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGA-TAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| ||||| |||| ||||| | || ||||| | | || || || Sbjct 21875 CCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGT-TGTTGGTCTGGAGGAATGCCCTC 21817 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||| || | || | |||| ||| || ||||| | || Sbjct 21816 CTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAACTTCCAAGGT 21757 Query 152066 AATAGTTTTGCCCGTGAGA 152084 || || ||||| |||||| Sbjct 21756 GATGGTCTTGCCTGTGAGA 21738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || | ||| || || ||||| |||||||| || || || || | ||||| Sbjct 22517 GAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCCAGAGTTCG 22458 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || ||| || || ||||| || | |||||||||| | ||| ||||| Sbjct 22457 ACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGGATGCCTTC 22398 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || ||||| || || || | || | | |||| || ||| ||||||||||| Sbjct 22397 TTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACTTCAAGAGT 22338 Query 152066 AATAGTTTTGCCCGTGAG 152083 || || || || || || Sbjct 22337 GATCGTCTTACCAGTAAG 22320 >seq7108 Length=7890 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | || ||||| || || || ||||| || || || || | || ||||| Sbjct 5078 ACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCCGTCTTCC 5019 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| ||||| ||||| | || || || |||| | ||| |||||||| |||||| Sbjct 5018 AGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGGATACCTTCCTTGTCTTGA 4959 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| |||||| | || | | |||| ||| ||| || || || || ||||| ||| Sbjct 4958 ATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATAGTCTTG 4899 Query 152076 CCCGTGAG 152083 |||||||| Sbjct 4898 CCCGTGAG 4891 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || ||||||||||||||||||||||| ||||| | || | || ||| Sbjct 5366 AGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCT 5307 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | | ||||||||||| | ||| || ||||| ||| Sbjct 5306 TCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCT 5247 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| || ||| || ||||| |||||||| Sbjct 5246 TGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTC 5187 Query 152073 TTGCCCGT 152080 ||||| || Sbjct 5186 TTGCCGGT 5179 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || ||||| || |||||||||||||| | ||| | ||||||||| | Sbjct 5943 CAAG-TGGAGTGTTGATTCTTTCTGAATGTTGTAATCGGCCAGAGTGCGCCCATCTTCGA 5885 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || || || || || | ||| || || | | ||| || || || || || Sbjct 5884 GTTGCTTT--CCAGCAAAAATGAGACGCTGTTGATCGGGAGGGATGCCCTCTTTATCCTG 5827 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| | || | | |||| || |||||||| ||||| || || || Sbjct 5826 GATCTTGGTCTTCACATTGTCAATGGTGTCCGACGATTCTACTTCCAGAGTGATGGTCTT 5767 Query 152075 GCCCGTGAG 152083 ||| ||||| Sbjct 5766 GCCGGTGAG 5758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153588479984765