Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10166 183 6e-41 seq7108 165 2e-35 >seq10166 Length=49910 Score = 183 bits (202), Expect = 6e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | ||||| || || || || ||||||||||||||||| || Sbjct 21945 ACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCGGC 21886 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || |||||||| |||||||| ||||||||||| || ||||||||||| || Sbjct 21885 CAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTCTGGAGG 21826 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| ||||| ||| ||||||| |||||||||| ||| || Sbjct 21825 AATGCCCTCCTTGTCTTGAATCTTGGCTTTAACGTTATCGATCGTGTCCGAAGATTCAAC 21766 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||| | ||||| ||||| || || Sbjct 21765 TTCCAAGGTGATGGTCTTGCCTGT 21742 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| ||| | |||| || |||||||| || ||||| || Sbjct 22525 CCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATAGTCCGCC 22466 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| || |||||||| | |||||| ||||| || Sbjct 22465 AGAGTTCGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGGTCCGGGGGG 22406 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || ||||| || || ||| ||||||| ||||| || | || ||| Sbjct 22405 ATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAGGACTCAACT 22346 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||||||||| || Sbjct 22345 TCAAGAGTGATCGTCTTACCAGT 22323 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | ||| ||||| |||||||||||||| || Sbjct 22235 CCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCC 22176 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| || ||||||||||| ||||| ||||| || Sbjct 22175 AGAGTTCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCTGGAGGG 22116 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| ||||| || || || | || |||||||| || | |||||| Sbjct 22115 ATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAGGACTCGACT 22056 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | ||||||||| || || ||||| Sbjct 22055 TCCAAAGTGATCGTTTTTCCTGTCAA 22030 >seq7108 Length=7890 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || ||||||| || | ||| |||||| || ||||||||||| || Sbjct 6561 CCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCC 6502 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||| || ||||| || |||||||| ||||||||||| || || ||| Sbjct 6501 AGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCGGG 6442 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| | || ||| | || || |||||||| | |||||| Sbjct 6441 ATGCCTTCCTTGTCTTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGACGATTCGACC 6382 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || || ||||| || || |||||||| Sbjct 6381 TCCAGGGTGATGGTTTTCCCCGTCAA 6356 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||||||| || ||| || || || || ||||||||||| Sbjct 5097 ACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGC 5038 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||| || || |||||||| |||||||||||||| |||||||| || || Sbjct 5037 CAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGG 4978 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||||||||| || || || || || | || || |||||||||| ||||| Sbjct 4977 GATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGAC 4918 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| ||||| Sbjct 4917 CTCCAGGGTGATAGTCTTGCCCGT 4894 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || || || | || ||| ||||||||||||||||| ||| Sbjct 5672 CCTCCACGGAGACGGAGAACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCA 5613 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || ||||| || || |||||||| | ||| || |||||| ||| Sbjct 5612 AGGGTACGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGA 5553 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || ||| | ||||| |||||||| | || ||| Sbjct 5552 ATGCCTTCCTTGTCCTGTATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACT 5493 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 || | ||||| |||||||| |||| Sbjct 5492 TCCAAGGTGATGGTCTTACCAGTCA 5468 Score = 140 bits (154), Expect = 7e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| |||| ||| | || |||||||||||||||||||| || Sbjct 5382 ACCGCCTCGGAGACGAAGGACCAAATGCAGTGTAGACTCTTTTTGGATGTTGTAGTCGGC 5323 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || | ||||| || ||||||||||| || || ||||| || Sbjct 5322 GAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAAGATCAATCGCTGCTGGTCCGGAGG 5263 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| ||||| || || ||| | ||||| ||||| || | || || Sbjct 5262 GATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGACTCAAC 5203 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAA 283078 || || || || ||||| || ||||| Sbjct 5202 CTCAAGGGTAATAGTCTTGCCGGTCAA 5176 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || |||||||| | || || |||||||| ||||||||||| Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || || || ||||| || ||||| || || | ||||||||| || ||| Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| | || ||| | || || || ||||| | |||||| Sbjct 6142 ATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGATTCGACC 6083 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| || ||||| || Sbjct 6082 TCAAGGGTGATTGTTTTACCTGT 6060 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| |||||||||||| || || |||||||||||||||||||| | || || || Sbjct 4630 ATCAGACGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTGACATTA 4571 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| || | |||||||| | |||||| ||||| || || Sbjct 4570 TCGATAGTGTCGGAGGACTCGACTTCCAAAGTGATGGTCTTGCCGGT 4524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046528440697610