Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7108 107 1e-18 seq10166 104 2e-17 >seq7108 Length=7890 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| ||||||||| || | ||| |||||| || || ||||| Sbjct 5103 TTGCATACCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTA 5044 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | | || |||| ||||| || || |||||||||||||| || || ||||| Sbjct 5043 GTCAGCCAATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATC 4984 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | ||||||||| || || ||| ||| || ||| | |||||||| | Sbjct 4983 CGGTGGGATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTGT--CAATGGTGTCCGAA 4926 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || || ||||||| || || ||||| |||||||| Sbjct 4925 GACTCGACCTCCAGGGTGATAGTCTTGCCCGTGAG 4891 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||||||||||||||| || || || || |||| || Sbjct 5654 ACGAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCAAGGGTACGGCCGTCTTCA 5595 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||||||||| || | ||| | |||||||| ||| | Sbjct 5594 AGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGT 5535 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | ||| || || |||| || || ||||| Sbjct 5534 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACTTCCAAGGTGATGGTCTTA 5475 Query 44309 CCCGTGAGG 44317 || || ||| Sbjct 5474 CCAGTCAGG 5466 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| |||||||||||||| |||||||| ||| |||| |||| ||| || || ||||| Sbjct 5346 CTCTTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCCAACTGTTTGCCTGCAAA 5287 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | ||| | || ||||| || ||||| ||||| | Sbjct 5286 GATCAATCGCTGCTGGTCCGGAGGGATCCCCTCCTTATCTTGAATCTTGGCCTTCACGTT 5227 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || ||||||| ||| || ||||| | ||||| ||||| || || Sbjct 5226 GTCGATTGTGTCGGAGGACTCAACCTCAAGGGTAATAGTCTTGCCGGT 5179 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||| || || || || || |||||||| Sbjct 5970 TTGCATCCCTCCGCGGAGACGCAAGACCAAGTGGAGTGTTGATTCTTTCTGAATGTTGTA 5911 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| || |||| | || || || ||||| || ||||| || | |||||| ||||| Sbjct 5910 ATCGGCCAGAGTGCGCCCATCTTCGAGTTGCTTTCCAGCAAAAATGAGACGCTGTTGATC 5851 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | || || || ||| ||||| ||||| | | |||||||| | || Sbjct 5850 GGGAGGGATGCCCTCTTTATCCTGGATCTTGGTCTTCACATTGTCAATGGTGTCCGACGA 5791 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||| || |||| || || ||||| || |||||| Sbjct 5790 TTCTACTTCCAGAGTGATGGTCTTGCCGGTGAGG 5757 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | ||||| ||||| || |||||||||||| ||||| Sbjct 6269 TTGCATTCCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTA 6210 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | |||| |||| || || ||||| ||||| || || | ||| || ||||| Sbjct 6209 GTCAGCCAAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATC 6150 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| || ||||| ||| | | | ||||| || | || Sbjct 6149 CGGAGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATGGTATCCGATGA 6090 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| ||||| | || || || || || ||||| Sbjct 6089 TTCGACCTCAAGGGTGATTGTTTTACCTGTGAG 6057 >seq10166 Length=49910 Score = 104 bits (114), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||| |||| | |||| ||||| ||| ||| || ||||||||||| || Sbjct 22239 CATTCCCCCTCGTAGTCGGAGGACCAAATGAAGAGTGGACTCTTTCTGGATGTTGTAGTC 22180 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 ||| ||||| ||| | || || || || || || ||||||||||| || ||||| ||| Sbjct 22179 GGCCAGAGTT--CGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGGTCT 22122 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282 | ||| | ||||| || || ||||| ||| || ||| | || ||||| | || Sbjct 22121 GGAGGGATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGT--CAATAGTGTCAGAGG 22064 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || || |||| || ||||| ||||| || Sbjct 22063 ACTCGACTTCCAAAGTGATCGTTTTTCCTGT 22033 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||| ||| |||||||| | || |||||||||||||||||| Sbjct 21951 TTGCATACCACCTCGAAGTCGCAAGACCAGGTGCAAGGTAGACTCCTTTTGGATGTTGTA 21892 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | || | || || || || || ||||||||||| || || || || || Sbjct 21891 GTCGGCCAACGTACGACCATCCTCGAGTTGTTTACCGGCAAAGATTAAGCGTTGTTGGTC 21832 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 || ||| | || ||||| || ||||| |||| || ||| | || ||||| | | Sbjct 21831 TGGAGGAATGCCCTCCTTGTCTTGAATCTT-GGCTTTAACGTTATCGATCGTGTCCGAAG 21773 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| || |||| || || ||||| || ||||| Sbjct 21772 ATTCAACTTCCAAGGTGATGGTCTTGCCTGTGAG 21739 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| | |||| || |||||| |||||||||||| || || Sbjct 22532 TTACATTCCACCACGGAGTCGAAGAACCAAATGGAGCGTGGACTCCTTTTGGATATTATA 22473 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || ||||| || |||| || || || || || |||||||| | ||| ||||| Sbjct 22472 GTCCGCCAGAGTT--CGACCGTCTTCAAGTTGTTTGCCCGCAAAGATGAGACGTTGCTGG 22415 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||| || ||| ||||| ||||| | | |||||||| | | Sbjct 22414 TCCGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATGGTGTCAGAG 22355 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || || || || | || |||||||| || || ||| Sbjct 22354 GACTCAACTTCAAGAGTGATCGTCTTACCAGTAAGG 22319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359921452276155