Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7108 84.2 2e-11 >seq7108 Length=7890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||||| || || |||||| || || || ||||| | Sbjct 6262 CCTCCTCGAAGGCGGAGGACCAGATGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGCC 6203 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || || |||||||||||||| || || || ||||| |||| ||| Sbjct 6202 AAAGTGCGCCCGTCTTCAAGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCCGGAGGA 6143 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 6142 ATGCCTTCCTTGTC 6129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||| || || ||| || ||||||||||| ||||| | Sbjct 6563 CGCCTCCACGAAGACGGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCG 6504 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| || | || || || ||||||||||| || |||| || || || || | | Sbjct 6503 CCAGGGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGATCGGGCG 6444 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||| ||| || |||| ||| | | | ||||| ||| || Sbjct 6443 GGATGCCTTCCTTGTCTTGGATCTTGGTCTTC-ACGTTGTCAATCGTGTCCGACGATTCG 6385 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCA 41840 ||||||| || || ||||| ||||||| Sbjct 6384 ACCTCCAGGGTGATGGTTTTCCCCGTCA 6357 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || ||||||||||||| ||| |||||||||||| || ||||| | Sbjct 5096 CCACCACGAAGTCGCAACACCAGATGCAAGGTGGACTCCTTCTGAATATTGTAGTCAGCC 5037 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || || || || ||||| || |||| || ||||| |||| || Sbjct 5036 AATGTACGGCCGTCTTCCAGTTGTTTTCCGGCAAAGATCAACCGTTGTTGATCCGGTGGG 4977 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| || | || | | | ||||| ||||| || Sbjct 4976 ATACCTTCCTTGT-CTTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAAGACTCGAC 4918 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841 ||||| || || || || ||||| || Sbjct 4917 CTCCAGGGTGATAGTCTTGCCCGTGAG 4891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462213186158000