Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12087 114 1e-20 seq4594 113 5e-20 seq12084 111 2e-19 seq12086 107 2e-18 seq23 89.7 5e-13 >seq12087 Length=1588 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || ||||| |||||||| | || ||||| | |||||| | | | |||| |||| Sbjct 426 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACG-TCAA 368 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || ||| || | ||||| || || || ||| | || || || ||| | |||| || || Sbjct 367 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 308 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || ||| |||| |||| |||||| | |||||||||||||||||||||| |||| | Sbjct 307 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 248 Query 40890 GCATCTAGTGTTGCG 40904 |||||| ||||| || Sbjct 247 GCATCTCGTGTTACG 233 >seq4594 Length=2528 Score = 113 bits (124), Expect = 5e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || |||||||| | || || || | |||| | | | |||| |||| Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACG-TCAA 1456 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||| || | ||||| ||||| ||||||| || || Sbjct 1455 GGCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGG 1396 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || |||| ||||||||| |||||||||||||||||||||| |||| || Sbjct 1395 AAAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACT 1336 Query 40890 GCAT 40893 ||| Sbjct 1335 CCAT 1332 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || |||||||| |||| | | || ||||| || | |||| | | | |||| |||||| Sbjct 2384 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACG-TCAAGGC 2326 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| || || || ||| | ||||||||||| | || | || || || Sbjct 2325 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2266 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| |||| |||| || |||||||||||||| || ||| | || || || Sbjct 2265 GCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 2206 Query 40893 TCTAGT 40898 ||| || Sbjct 2205 TCTGGT 2200 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAA 40769 ||||| || || || ||||| | || || ||| | | |||| | || || | |||| Sbjct 1806 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATG-TCAA 1748 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| || ||||||||| | || || ||||| | |||| || || Sbjct 1747 AGCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGG 1688 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| ||||| |||| || ||||| |||||||||||| ||||| ||| | || || Sbjct 1687 TAAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 1628 Query 40890 GCAT 40893 ||| Sbjct 1627 TCAT 1624 >seq12084 Length=2187 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| || |||||| | || || ||| ||| |||| | | | |||| |||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACG-TCAA 1886 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | ||||||| ||||| || || |||||| | || |||||||| ||||| | ||| || Sbjct 1885 AGCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGG 1826 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| || || || || | || ||| | ||||||||||||||||||||| |||| || Sbjct 1825 CAAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1766 Query 40890 GCA 40892 || Sbjct 1765 CCA 1763 >seq12086 Length=376 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || |||||||| |||||| | || ||||| || |||||| | | | |||| |||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACG-TCAAGGC 171 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| || || |||||| | ||||||||||| | || | || || || Sbjct 170 GAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 111 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| |||| |||||||| |||||||||||||| || ||| | || || || Sbjct 110 GCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 51 Query 40893 TCTAGT 40898 ||| || Sbjct 50 TCTGGT 45 >seq23 Length=7809 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 116657 GCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG 116716 ||||| || || || ||||| | |||||| | || ||||| ||||| | | ||||||| Sbjct 2140 GCCGAAGCTTCCTTTTGGACAGCCGAGGAAATCGATCTGTCGAAGGATATGCACGACTGG 2199 Query 116717 GAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 || ||||| | ||||| || |||||||| || || || || || || || Sbjct 2200 GATAATAAGTTGAATGGGGACGAGAAACACTTCATCAAACATGTCCTCGCTTTCTTTGCT 2259 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||| || |||||||||||||| || ||||| | || | || || || | Sbjct 2260 GCCTCCGATGGGATCGTCAACGAGAACCTCATCGAGAGGTTTAGTGGAGAAGTTCAAATC 2319 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 || || || || || ||||||||||| || ||| Sbjct 2320 GCTGAAGCTCGATGTTTCTACGGCTTCCAAATC 2352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515076175150080