Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4594 87.8 2e-12 seq12087 86.0 7e-12 >seq4594 Length=2528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||| | |||||||| | ||| |||||||||||| ||||||| || Sbjct 1021 TCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGC 1080 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || || ||||| ||||| || || || ||||| || || | || Sbjct 1081 CAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGG 1140 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | ||||| || ||| || |||| ||| | | | |||||| ||||| | Sbjct 1141 GATTCCTTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGATGATTCGA 1199 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTA 43161 | || | |||||||||||||| |||| Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGTTA 1226 >seq12087 Length=1588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| ||||| | |||||| ||| |||||| || || ||||| || |||| || || | Sbjct 232 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 291 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||||||| || || | |||||| || || | || | | ||||| Sbjct 292 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 351 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| ||| |||| ||| | | | |||||| || || || || | |||| Sbjct 352 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 410 Query 43147 TGGTTTTGCCCGTTAG 43162 |||| ||||| || || Sbjct 411 TGGTCTTGCCGGTAAG 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571658863434240