Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10000 109 5e-19 seq12086 87.8 2e-12 seq4594 84.2 2e-11 >seq10000 Length=7706 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| || ||| || ||||| || |||||||| ||||| |||| || || || Sbjct 4752 TTCTCAACTCGAGACATGAAGAGATCAGGAATCCATAGCGCGTAAAACAAGTCCCGAGCT 4693 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || || || || ||| ||||| |||| ||||||||||| ||| Sbjct 4692 CGACTTTCTTCCTTCCCATGATTTTTCCGCAAGTCCAACCAGTCGAACACGTCCGCGTGC 4633 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || |||||||| ||||| || |||||||| || Sbjct 4632 CATGGCTCCAGGTAGATTGCAAAGGCCCCGGGTCTCTTGTTGCCTCCTTGATCGACATAT 4573 Query 23519 CGGGCCGT 23526 | ||||| Sbjct 4572 CTCGCCGT 4565 >seq12086 Length=376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||||||||||||| | || || || | ||||||| | || | ||||| Sbjct 231 TGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGG 172 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || || ||||||||||| | || || |||||||| ||| | || || || || | Sbjct 171 CGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAA 112 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | || |||| ||| | || | || || ||||| |||||||| ||||| |||| Sbjct 111 AGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTC 52 Query 31395 ATCTGGTACTTAGACT 31410 ||||||| || |||| Sbjct 51 ATCTGGTTCTCCGACT 36 >seq4594 Length=2528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||||||||||| | | || || || | || |||| | || | ||||| Sbjct 2386 TGACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGG 2327 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || || ||||||||||| | || || |||||||| ||| | || || || || | Sbjct 2326 CGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAA 2267 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | || |||| ||| | ||| | || || ||||| |||||||| ||||| |||| Sbjct 2266 AGCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTC 2207 Query 31395 ATCTGGTACTTAGACT 31410 ||||||| || |||| Sbjct 2206 ATCTGGTTCTCCGACT 2191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445642655247360