Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10000 87.8 2e-12 >seq10000 Length=7706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 63979 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 |||| || | | ||| || || || | ||| || || || || || || ||||| |||| Sbjct 3824 CATAAGTGTAAAGATCTTCGATAACCTGACTGAAGAGCTTCTTAGTCTCTTTGTGAAGAT 3765 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64097 | || || || ||||| ||||| | ||||||||||||||| | || || || || Sbjct 3764 TGCTGATTGCGATCCTGGCAGCTAGGACGGCATAATCCGGATGGCGAGTGGT-CATGTAA 3706 Query 64098 GCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64147 || || |||| ||||||| |||||||||| ||||| || || ||||| Sbjct 3705 GCAGCGGTTTCAGCTGCCAAGTTGTCCAATTCGACCGTGGTGACACCATT 3656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629642762634240