Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10000 86.0 8e-12 >seq10000 Length=7706 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 66772 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 66831 |||| || | | ||| || || || | ||| || || || || || |||||||| |||| Sbjct 3824 CATAAGTGTAAAGATCTTCGATAACCTGACTGAAGAGCTTCTTAGTCTCTTTGTGAAGAT 3765 Query 66832 T--TGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT 66889 | |||| || || || || |||| | ||||||||||||||| | || || || || Sbjct 3764 TGCTGATT--GCGATCCTGGCAGCTAGGACGGCATAATCCGGATGGCGAGTGGT-CATGT 3708 Query 66890 -GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 66948 || || |||| ||||||| |||||||||| ||||| || || ||||| | | | Sbjct 3707 AAGCAGCGGTTTCAGCTGCCAAGTTGTCCAATTCGACCGTGGTGACACCATTGAAAACAC 3648 Query 66949 CTTGGATAACCTTC 66962 | | |||||| ||| Sbjct 3647 CATTGATAACTTTC 3634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657990091230720